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0
votes
0
replies
242
views
Prediction of altrered metabolites from altered gene expression
Gene
Metabolites
9 months ago by
english.server
▴ 290
0
votes
0
replies
652
views
Comment:
Comment: Order of Normalization/Surrogate variable analysis(or even known batch correctio
19 months ago by
english.server
▴ 290
1
vote
2
replies
652
views
Order of Normalization/Surrogate variable analysis(or even known batch correction)/QC
Normalization
Batch
QC
correction
effect
19 months ago by
english.server
▴ 290
0
votes
0
replies
278
views
How to calculate/visualize network robustness/vulnerability?
Erdos-Renyi
Barabasi-Albert
igraph
22 months ago by
english.server
▴ 290
4
votes
1
reply
479
views
Cancer-cell-line-specific essential genes
genes
database
essential
updated 23 months ago by
Kevin Blighe
87k • written 23 months ago by
english.server
▴ 290
3
votes
1
reply
402
views
Disease-specific SNPs. Any databases?
SNP
database
updated 23 months ago by
Kevin Blighe
87k • written 23 months ago by
english.server
▴ 290
0
votes
0
replies
398
views
Lasso for survival analysis: Expression dichotomization necessary or not?
Dichotomization
Lasso
survival
2.3 years ago by
english.server
▴ 290
1
vote
1
reply
855
views
Comment:
Comment: 3d structure without PDB
2.7 years ago by
english.server
▴ 290
1
vote
0
replies
376
views
Comparing distribution of microarray data to that of RNA-seq data
distribution
2.7 years ago by
english.server
▴ 290
0
votes
1
reply
855
views
Answer:
Answer: 3d structure without PDB
2.7 years ago by
english.server
▴ 290
1
vote
1
reply
842
views
Correcting for batch effect in survival data
batch
effect
survival
updated 2.9 years ago by
Kevin Blighe
87k • written 2.9 years ago by
english.server
▴ 290
1
vote
0
replies
832
views
TCGA methylation data analysis. beta values to differentially regulated CpGs
methylation
beta values
DMP
3.1 years ago by
english.server
▴ 290
1
vote
1
reply
3.4k
views
Comparing two different COX models in R
survival
classification
coxph
3.2 years ago by
english.server
▴ 290
0
votes
0
replies
463
views
How to find (all) transcripion factors of a certin cell type/tissue?
transciption factor
database
3.2 years ago by
english.server
▴ 290
0
votes
0
replies
1.1k
views
Comment:
C: Clustering/Hetamap of count RNAseq data
3.3 years ago by
english.server
▴ 290
4
votes
3
replies
1.1k
views
Clustering/Hetamap of count RNAseq data
RNA-Seq
Normalization
updated 3.3 years ago by
ATpoint
81k • written 3.3 years ago by
english.server
▴ 290
1
vote
0
replies
1.1k
views
Comment:
C: Clustering/Hetamap of count RNAseq data
3.3 years ago by
english.server
▴ 290
0
votes
1
reply
9.1k
views
Comment:
C: Predicting survival of cancer patients using glmnet cox
3.3 years ago by
english.server
▴ 290
1
vote
0
replies
870
views
Comment:
C: Identify small strings in a larger sequence in R
3.3 years ago by
english.server
▴ 290
0
votes
1
reply
9.1k
views
Comment:
C: Predicting survival of cancer patients using glmnet cox
3.3 years ago by
english.server
▴ 290
0
votes
0
replies
922
views
Comment:
C: P-value adjustment for diffreent classes each tested individually
3.4 years ago by
english.server
▴ 290
1
vote
2
replies
922
views
P-value adjustment for diffreent classes each tested individually
survival
p-value adjustment
3.4 years ago by
english.server
▴ 290
0
votes
0
replies
1.8k
views
Comment:
C: Hazard ratio for many genes (gene signature)
3.6 years ago by
english.server
▴ 290
0
votes
0
replies
1.8k
views
Comment:
C: Hazard ratio for many genes (gene signature)
3.6 years ago by
english.server
▴ 290
0
votes
2
replies
1.8k
views
Comment:
C: Hazard ratio for many genes (gene signature)
3.6 years ago by
english.server
▴ 290
0
votes
2
replies
1.8k
views
Comment:
C: Hazard ratio for many genes (gene signature)
3.6 years ago by
english.server
▴ 290
7
votes
9
replies
1.8k
views
Hazard ratio for many genes (gene signature)
survival analysis
R
3.6 years ago by
english.server
▴ 290
0
votes
1
reply
1.1k
views
Comment:
C: Inconsistent survival times in TCGA clinicalMatrix file?
3.6 years ago by
english.server
▴ 290
2
votes
3
replies
1.1k
views
Inconsistent survival times in TCGA clinicalMatrix file?
survival analysis
TCGA data
updated 3.6 years ago by
Kevin Blighe
87k • written 3.6 years ago by
english.server
▴ 290
0
votes
1
reply
1.0k
views
Comment:
C: Too many RNAseq samples. What to do?
3.7 years ago by
english.server
▴ 290
5
votes
6
replies
1.0k
views
Too many RNAseq samples. What to do?
RNA-Seq
deseq2
edger
3.7 years ago by
english.server
▴ 290
0
votes
0
replies
1.0k
views
Comment:
C: Too many RNAseq samples. What to do?
3.7 years ago by
english.server
▴ 290
0
votes
0
replies
3.5k
views
Comment:
C: Differential gene expression, starting from RSEM expected count values.
4.1 years ago by
english.server
▴ 290
9
votes
5
replies
3.5k
views
Differential gene expression, starting from RSEM expected count values.
rsem
expected-count
deseq2
updated 4.1 years ago by
i.sudbery
18k • written 4.1 years ago by
english.server
▴ 290
1
vote
0
replies
1.2k
views
Comment:
C: Survival analysis: Why to categorize age?
4.2 years ago by
english.server
▴ 290
0
votes
1
reply
1.2k
views
Comment:
C: Survival analysis: Why to categorize age?
4.2 years ago by
english.server
▴ 290
2
votes
1
reply
1.2k
views
Comment:
C: Survival analysis: Why to categorize age?
4.2 years ago by
english.server
▴ 290
0
votes
1
reply
1.2k
views
Comment:
C: Survival analysis: Why to categorize age?
4.2 years ago by
english.server
▴ 290
14
votes
9
replies
1.2k
views
Survival analysis: Why to categorize age?
survival
updated 4.2 years ago by
Kevin Blighe
87k • written 4.2 years ago by
english.server
▴ 290
0
votes
0
replies
950
views
Comment:
C: DEG, wilcoxon, p value adjustment
4.2 years ago by
english.server
▴ 290
2
votes
2
replies
950
views
DEG, wilcoxon, p value adjustment
RNA-Seq
4.2 years ago by
english.server
▴ 290
0
votes
0
replies
3.5k
views
Comment:
C: Tophat's Mean Inner Distance between Mate Pairs
updated 4.4 years ago by
Ram
43k • written 8.4 years ago by
english.server
▴ 290
0
votes
0
replies
1.1k
views
Comment:
C: Removing certain levels of Batch before batch effect correction
4.5 years ago by
english.server
▴ 290
0
votes
1
reply
1.1k
views
Comment:
C: Removing certain levels of Batch before batch effect correction
4.5 years ago by
english.server
▴ 290
5
votes
6
replies
1.1k
views
Removing certain levels of Batch before batch effect correction
batch management
diferential expression
4.5 years ago by
english.server
▴ 290
0
votes
1
reply
1.1k
views
Comment:
C: Batch removal VS batch effect correction
4.5 years ago by
english.server
▴ 290
0
votes
0
replies
1.7k
views
Comment:
C: miRanda Match score and Free energy cut-offs
4.6 years ago by
english.server
▴ 290
2
votes
2
replies
2.9k
views
Are the values in geo .soft files log2 transformed or normalized?
geo .soft files
updated 4.6 years ago by
Biostar
20 • written 8.4 years ago by
english.server
▴ 290
0
votes
0
replies
1.2k
views
Comment:
C: Robust rank aggregation with imprecise p values
4.6 years ago by
english.server
▴ 290
0
votes
1
reply
1.2k
views
Comment:
C: Robust rank aggregation with imprecise p values
4.6 years ago by
english.server
▴ 290
107 results • Page
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