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questions
0
votes
3
replies
1.2k
views
Adding additional covariates to plink logistic regression model on HLA returns p-vals etc as NA
plink
association_test
HLA
updated 16 months ago by
shijxovo
• 0 • written 2.6 years ago by
4galaxy77
2.9k
0
votes
1
reply
659
views
Getting chromosome of unusual chromosome names e.g. 'CHR_HSCHR8_8_CTG1'
chromsome
biomart
20 months ago by
4galaxy77
2.9k
6
votes
5
replies
11k
views
filtering by POS in bcftools
software error
bcftools
updated 22 months ago by
jediknightchannel
▴ 10 • written 5.8 years ago by
4galaxy77
2.9k
0
votes
3
replies
901
views
How to obtain highest level GO term from go_id?
GO-term
R
updated 22 months ago by
dariober
15k • written 22 months ago by
4galaxy77
2.9k
1
vote
1
reply
973
views
Failing to compile kent utilities due to openSSL dependencies
installation
vep
loftee
conda
updated 24 months ago by
barslmn
★ 2.3k • written 24 months ago by
4galaxy77
2.9k
6
votes
7
replies
1.9k
views
Are package downgrades a necessary evil in Conda?
environments
conda
updated 2.0 years ago by
GenoMax
147k • written 2.0 years ago by
4galaxy77
2.9k
0
votes
0
replies
400
views
Lifting over bed file with REF ALT and RSIDs
liftover
2.2 years ago by
4galaxy77
2.9k
1
vote
1
reply
528
views
Converting RSIDs in the HLA region (e.g.) HLA-A*:01:01g-B*08:01 format?
SNP
HLA
rsid
updated 2.3 years ago by
GenoMax
147k • written 2.3 years ago by
4galaxy77
2.9k
2
votes
1
reply
576
views
Why does the CADD database have multiple lines for the same mutation/substitution with different gene IDs?
cadd
updated 2.4 years ago by
tomas4482
▴ 430 • written 2.4 years ago by
4galaxy77
2.9k
5
votes
1
reply
482
views
Why is there 55,092 unique ensembl ENSG IDs?
gene
ensembl
updated 2.6 years ago by
GenoMax
147k • written 2.6 years ago by
4galaxy77
2.9k
0
votes
0
replies
397
views
Unsure why HLA imputation job rejected from Michigan Imputation Server
HLA
imputation
2.7 years ago by
4galaxy77
2.9k
0
votes
0
replies
507
views
Is there any software that can identify long haplotypes in a given region?
haplotype
selection
2.8 years ago by
4galaxy77
2.9k
0
votes
0
replies
471
views
Obtaining European allele frequencies for TopMed SNPs
topmed
allele-frequency
2.8 years ago by
4galaxy77
2.9k
2
votes
2
replies
969
views
Example of simple repository using htslib API to read in .bcf
htslib
3.5 years ago by
4galaxy77
2.9k
5
votes
7
replies
1.8k
views
compiling shapeit4 : cannot find -lcurl
software error
compiling
updated 3.8 years ago by
JC
13k • written 3.8 years ago by
4galaxy77
2.9k
0
votes
1
reply
1.3k
views
Efficient way to download all .bam files in a project from ENA to remote server
ENA
bam
updated 20 months ago by
Ram
44k • written 3.8 years ago by
4galaxy77
2.9k
0
votes
1
reply
1.5k
views
Annotating VCF with centimorgan information (cM)
snp
vcf
3.8 years ago by
4galaxy77
2.9k
1
vote
2
replies
2.0k
views
automatically create index files from output in bcftools
software error
updated 5.8 years ago by
Kevin Blighe
88k • written 5.8 years ago by
4galaxy77
2.9k
1
vote
3
replies
3.9k
views
Minimum number of replicates for gene co-expression analysis
RNA-Seq
gene expression
updated 7.3 years ago by
Manoj
• 0 • written 8.4 years ago by
4galaxy77
2.9k
1
vote
3
replies
2.6k
views
Filtering blastx by taxonomy ID
blast
genome
software error
7.5 years ago by
4galaxy77
2.9k
0
votes
2
replies
2.6k
views
blast database formatting issue
blast
software error
updated 7.6 years ago by
Michael
55k • written 7.6 years ago by
4galaxy77
2.9k
3
votes
6
replies
2.9k
views
Testing for significant clustering in dendrograms of gene expression
RNA-Seq
updated 7.6 years ago by
Jean-Karim Heriche
27k • written 7.6 years ago by
4galaxy77
2.9k
5
votes
11
replies
7.4k
views
6 follow
Best primer design software
PCR
sequence
gene
updated 7.7 years ago by
h.mon
35k • written 7.7 years ago by
4galaxy77
2.9k
3
votes
8
replies
2.6k
views
Measuring transcriptional noise
RNA-Seq
updated 2.4 years ago by
Ram
44k • written 8.8 years ago by
4galaxy77
2.9k
1
vote
6
replies
3.9k
views
0 mapping hits for blast2go
software-error
rna-seq
blast
updated 2.4 years ago by
Ram
44k • written 8.9 years ago by
4galaxy77
2.9k
1
vote
3
replies
3.4k
views
.gtf file error in Tophat2 - Error at parsing .tlst line (invalid strand):
RNA-Seq
tophat
bowtie
updated 2.3 years ago by
Ram
44k • written 9.1 years ago by
4galaxy77
2.9k
0
votes
1
reply
3.4k
views
fastq_quality_filter: input file (-) has unknown file format (not FASTA or FASTQ)
RNA-Seq
software-error
updated 2.3 years ago by
Ram
44k • written 9.1 years ago by
4galaxy77
2.9k
27 results • Page
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