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4.8k
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Comment: C: Extremely low assigned reads in featureCounts
6.1 years ago by Arindam Ghosh ▴ 550
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0
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16k
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Comment: C: error in getting results from DESeq2
updated 6.2 years ago by 45k • written 7.1 years ago by ▴ 550
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0
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2.6k
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Comment: C: RNA-seq quality assessment
6.2 years ago by Arindam Ghosh ▴ 550
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1
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21k
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Comment: C: How to interpret Per sequence GC content module in FastQC for RNA-seq data?
6.2 years ago by Arindam Ghosh ▴ 550
0
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1
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4.6k
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Comment: C: Demultiplexing SRA data
6.3 years ago by Arindam Ghosh ▴ 550
0
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0
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19k
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Comment: C: Can We Compare Two Different Rna-Seq Experiments?
6.5 years ago by Arindam Ghosh ▴ 550
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0
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5.5k
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Comment: C: Combining RNA-seq data
6.5 years ago by Arindam Ghosh ▴ 550
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0
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6.5k
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Comment: C: Combining the RNAseq datasets
6.5 years ago by Arindam Ghosh ▴ 550
0
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0
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30k
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Comment: C: Can anyone suggest a good tutorial to learn RNA-seq analysis?
6.6 years ago by Arindam Ghosh ▴ 550
4
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2
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3.7k
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How to efetch specific attributes from BioSamples?
ncbi eutils xml
updated 6.6 years ago by 166k • written 6.6 years ago by ▴ 550
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1
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2.1k
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Comment: C: Data selection for RNA-seq data analysis
6.6 years ago by Arindam Ghosh ▴ 550
0
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0
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1.9k
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Comment: C: What does cluster number in ClusterMaker represent?
6.6 years ago by Arindam Ghosh ▴ 550
2
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2
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1.9k
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What does cluster number in ClusterMaker represent?
cytoscape clustering clustermaker network
updated 6.6 years ago by ▴ 650 • written 6.6 years ago by ▴ 550
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1
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1.7k
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Comment: C: How to construct GCN?
6.7 years ago by Arindam Ghosh ▴ 550
2
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3
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1.7k
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How to construct GCN?
RNA-Seq network gene coexpression network
updated 6.7 years ago by 89k • written 6.7 years ago by ▴ 550
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0
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1.7k
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Comment: C: Low Sample For Coexpression
6.7 years ago by Arindam Ghosh ▴ 550
0
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1
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1.7k
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Comment: C: Low Sample For Coexpression
6.7 years ago by Arindam Ghosh ▴ 550
0
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0
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2.3k
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Comment: C: Any coexpression tools for RNAseq expression data
6.7 years ago by Arindam Ghosh ▴ 550
0
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1
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4.0k
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What are the terms to look forward to for proper equilibration in GROMACS?
gromacs molecular dynamics
updated 6.8 years ago by ▴ 10 • written 7.6 years ago by ▴ 550
0
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0
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17k
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Comment: C: Questions about DAVID
6.9 years ago by Arindam Ghosh ▴ 550
0
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0
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42k
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Comment: A: How To Get Number Of Reads In Bam File Efficiently In Python?
7.0 years ago by Arindam Ghosh ▴ 550
0
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1
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12k
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Comment: C: How filter genes to construct co-expression network?
7.1 years ago by Arindam Ghosh ▴ 550
0
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0
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11k
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Comment: C: How to graphically tell if data has been normalized?
7.1 years ago by Arindam Ghosh ▴ 550
0
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1
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11k
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Comment: C: How to graphically tell if data has been normalized?
7.1 years ago by Arindam Ghosh ▴ 550
0
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1
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11k
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Comment: C: How to graphically tell if data has been normalized?
7.1 years ago by Arindam Ghosh ▴ 550
0
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0
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3.3k
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Answer: A: Finding orientation of single-ended reads (R or F)
7.1 years ago by Arindam Ghosh ▴ 550
0
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0
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4.9k
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Comment: C: removing outliers before running DESeq2
7.1 years ago by Arindam Ghosh ▴ 550
0
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1
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11k
views
Comment: C: How to graphically tell if data has been normalized?
7.1 years ago by Arindam Ghosh ▴ 550
13
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8
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11k
views
How to graphically tell if data has been normalized?
DESeq2 RNA-Seq normalization
updated 7.2 years ago by 89k • written 7.2 years ago by ▴ 550
0
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0
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4.3k
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Comment: C: Number of Transcripts in GRCh38
7.2 years ago by Arindam Ghosh ▴ 550
1
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0
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9.3k
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Comment: C: What is the difference between HISAT2 index "genome.tran" and "genome"
7.2 years ago by Arindam Ghosh ▴ 550
0
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1
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4.5k
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Comment: C: HISAT2 and Stringtie: difference in Stringtie results when using pre-built index
7.2 years ago by Arindam Ghosh ▴ 550
0
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1
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3.4k
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Comment: C: Build a HISAT2 index of hg 19
7.2 years ago by Arindam Ghosh ▴ 550
0
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1
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3.6k
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Comment: C: What if a network is not scale-free?
7.2 years ago by Arindam Ghosh ▴ 550
2
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7
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3.6k
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What if a network is not scale-free?
network cytoscape RNA-Seq
7.2 years ago by Arindam Ghosh ▴ 550
0
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0
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6.0k
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Answer: A: htslib installation problem
7.2 years ago by Arindam Ghosh ▴ 550
0
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0
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8.0k
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Answer: A: Run htseq-count with multiple sam files?
7.3 years ago by Arindam Ghosh ▴ 550
3
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0
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26k
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Answer: A: htseq-counts output merge into one matrix ??
7.3 years ago by Arindam Ghosh ▴ 550
0
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0
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5.3k
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Comment: C: How many genes in RNA seq?
7.3 years ago by Arindam Ghosh ▴ 550
12
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19
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5.3k
views
6 follow
How many genes in RNA seq?
RNA-Seq stringtie
7.3 years ago by Arindam Ghosh ▴ 550
0
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3
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5.3k
views
Comment: C: How many genes in RNA seq?
7.3 years ago by Arindam Ghosh ▴ 550
0
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0
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5.3k
views
Comment: C: How many genes in RNA seq?
7.3 years ago by Arindam Ghosh ▴ 550
1
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1
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5.3k
views
Comment: C: How many genes in RNA seq?
7.3 years ago by Arindam Ghosh ▴ 550
2
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8
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2.8k
views
6 follow
Which HTSeq mode is suitable for RNAseq data to be used for differential gene expression?
RNA-Seq alignment ngs
updated 7.3 years ago by 35k • written 7.3 years ago by ▴ 550
0
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1
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2.8k
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Comment: C: Which HTSeq mode is suitable for RNAseq data to be used for differential gene ex
7.3 years ago by Arindam Ghosh ▴ 550
0
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0
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3.8k
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What is a good binding energy in AutoDock?
docking autodock protein
7.4 years ago by Arindam Ghosh ▴ 550
0
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0
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3.3k
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Comment: C: Code for DEG analysis using Ballgown
7.4 years ago by Arindam Ghosh ▴ 550
0
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2
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3.3k
views
Code for DEG analysis using Ballgown
RNA-Seq ballgown stattest ngs
updated 7.4 years ago by 5.9k • written 7.5 years ago by ▴ 550
0
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0
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1.5k
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Comment: C: Ideas to improve the New Tuxedo
7.4 years ago by Arindam Ghosh ▴ 550
0
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0
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5.8k
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Comment: C: Please adivse me on differential expression analysis on the STAR/Stringtie outpu
7.4 years ago by Arindam Ghosh ▴ 550
223 results • Page 3 of 5
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