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5
votes
3
replies
8.6k
views
CDS prediction for newly assembled transcripts
RNA-Seq transcriptome Assembly CDS
updated 9 weeks ago by ▴ 90 • written 7.5 years ago by ▴ 160
0
votes
1
reply
1.9k
views
Comment: Comment: Can any JBrowse2 tracks show multiple colors for reads at different nucleotide p
19 months ago by I0110 ▴ 160
0
votes
1
reply
1.9k
views
Comment: Comment: Can any JBrowse2 tracks show multiple colors for reads at different nucleotide p
19 months ago by I0110 ▴ 160
4
votes
7
replies
1.9k
views
Can any JBrowse2 tracks show multiple colors for reads at different nucleotide positions?
JBrowse JBrowse2
updated 19 months ago by ★ 4.4k • written 19 months ago by ▴ 160
1
vote
1
reply
1.4k
views
Tutorial: Parsing HMMER output
HMMER
updated 14 months ago by • 0 • written 19 months ago by ▴ 160
0
votes
1
reply
1.3k
views
Comment: Comment: Identifying syntenic gene pairs
2.3 years ago by I0110 ▴ 160
0
votes
3
replies
1.3k
views
Identifying syntenic gene pairs
Synteny
updated 2.3 years ago by ★ 3.1k • written 2.3 years ago by ▴ 160
0
votes
1
reply
964
views
Pre-filtering of annotated isoforms based on splice junctions
RSEM isoforms splicing RNA-seq Kallisto
updated 2.4 years ago by ★ 3.1k • written 2.4 years ago by ▴ 160
0
votes
0
replies
1.7k
views
Comment: Comment: JBrowse on GitHub (A question about file size)
2.8 years ago by I0110 ▴ 160
3
votes
4
replies
1.7k
views
JBrowse on GitHub (A question about file size)
JBrowse GitHub
2.8 years ago by I0110 ▴ 160
0
votes
0
replies
1.2k
views
Comment: Comment: A question about STAR and SLURM
3.4 years ago by I0110 ▴ 160
3
votes
2
replies
1.2k
views
A question about STAR and SLURM
SLURM STAR
3.4 years ago by I0110 ▴ 160
12
votes
3
replies
1.4k
views
A question about code sharing for publication
code
updated 2.9 years ago by 45k • written 3.4 years ago by ▴ 160
0
votes
1
reply
25k
views
Comment: Comment: Filtration Of Reads With Length Lower Than 30 From Bam
3.5 years ago by I0110 ▴ 160
0
votes
0
replies
760
views
Understanding degradome-seq result
degradome
4.2 years ago by I0110 ▴ 160
0
votes
2
replies
31k
views
Comment: C: Gene Set Enrichment Analysis
4.8 years ago by I0110 ▴ 160
0
votes
1
reply
31k
views
Comment: A: Gene Set Enrichment Analysis
4.8 years ago by I0110 ▴ 160
2
votes
4
replies
2.2k
views
What is "Possible polymerase run-on fragment"?
transcriptome
updated 5.2 years ago by 45k • written 7.4 years ago by ▴ 160
2
votes
1
reply
4.3k
views
Thermo Xcalibur RAW data to MGF
mass spectrometry massspectrometry
updated 5.7 years ago by 20 • written 7.5 years ago by ▴ 160
6
votes
13
replies
7.3k
views
How to add the start and stop position information to a gff file?
genome R Assembly Python
updated 6.2 years ago by 9.3k • written 8.7 years ago by ▴ 160
0
votes
1
reply
3.5k
views
Comment: C: Nanopore data to gtf/gff file
6.3 years ago by I0110 ▴ 160
0
votes
0
replies
3.5k
views
Comment: C: Nanopore data to gtf/gff file
6.4 years ago by I0110 ▴ 160
1
vote
6
replies
3.5k
views
Nanopore data to gtf/gff file
sequencing assembly
updated 4.5 years ago by • 0 • written 6.4 years ago by ▴ 160
0
votes
1
reply
3.5k
views
Comment: C: Nanopore data to gtf/gff file
6.4 years ago by I0110 ▴ 160
7
votes
2
replies
1.9k
views
How to start a website with jbrowse to show sequencing data?
jbrowse
updated 7.1 years ago by 20 • written 7.1 years ago by ▴ 160
0
votes
1
reply
2.9k
views
How to merge mgf files?
Proteomics
updated 7.3 years ago by ▴ 180 • written 7.3 years ago by ▴ 160
0
votes
0
replies
2.2k
views
Comment: C: What is "Possible polymerase run-on fragment"?
7.4 years ago by I0110 ▴ 160
0
votes
0
replies
4.1k
views
Comment: C: transition to bioinformatics
7.4 years ago by I0110 ▴ 160
0
votes
1
reply
2.2k
views
Comment: C: What is "Possible polymerase run-on fragment"?
7.4 years ago by I0110 ▴ 160
0
votes
0
replies
2.1k
views
Comment: C: Possible polymerase run-on fragment (within 2Kbases of a reference transcript)
7.4 years ago by I0110 ▴ 160
1
vote
0
replies
8.6k
views
Comment: C: CDS prediction for newly assembled transcripts
7.4 years ago by I0110 ▴ 160
0
votes
1
reply
2.9k
views
Comment: C: How to fix 5'UTR annotation with RNA-seq data?
7.7 years ago by I0110 ▴ 160
1
vote
3
replies
2.9k
views
How to fix 5'UTR annotation with RNA-seq data?
RNA-Seq
updated 7.7 years ago by ▴ 40 • written 7.7 years ago by ▴ 160
2
votes
1
reply
2.9k
views
Identify transcription start site using RNA-seq data
RNA-Seq
updated 7.8 years ago by ▴ 50 • written 7.8 years ago by ▴ 160
0
votes
0
replies
1.6k
views
Comment: C: The use of "and" in bioinformatics literature
7.8 years ago by I0110 ▴ 160
1
vote
2
replies
1.6k
views
The use of "and" in bioinformatics literature
Microarray
updated 7.8 years ago by ★ 2.0k • written 7.8 years ago by ▴ 160
7
votes
4
replies
3.3k
views
In the gff3 format, could one eukaryotic mRNA contain more than one protein coding sequences (i.e. polycistronic)?
gff3 annotation
7.8 years ago by I0110 ▴ 160
0
votes
0
replies
3.3k
views
Comment: C: In gff3 format, could one eukaryotic mRNA contain more than one protein coding s
7.8 years ago by I0110 ▴ 160
0
votes
1
reply
3.3k
views
Comment: C: In gff3 format, could one eukaryotic mRNA contain more than one protein coding s
7.9 years ago by I0110 ▴ 160
0
votes
0
replies
1.3k
views
bed file to gtf/gff
genome annotation
8.2 years ago by I0110 ▴ 160
0
votes
1
reply
2.5k
views
Comment: C: Host bam file on MongoDB?
8.3 years ago by I0110 ▴ 160
0
votes
1
reply
2.5k
views
Comment: C: Host bam file on MongoDB?
8.3 years ago by I0110 ▴ 160
0
votes
1
reply
2.5k
views
Comment: C: Host bam file on MongoDB?
8.3 years ago by I0110 ▴ 160
1
vote
7
replies
2.5k
views
Host bam file on MongoDB?
MongoDB R
8.3 years ago by I0110 ▴ 160
0
votes
0
replies
3.4k
views
Comment: C: Homologs between tomato and Arabidopsis
8.3 years ago by I0110 ▴ 160
0
votes
1
reply
3.4k
views
Comment: C: Homologs between tomato and Arabidopsis
8.3 years ago by I0110 ▴ 160
6
votes
5
replies
3.4k
views
Homologs between tomato and Arabidopsis
genome homology
updated 8.3 years ago by 35k • written 8.3 years ago by ▴ 160
0
votes
0
replies
6.5k
views
Comment: C: Differential expression for two very different samples
8.3 years ago by I0110 ▴ 160
0
votes
0
replies
6.5k
views
Comment: C: Differential expression for two very different samples
8.3 years ago by I0110 ▴ 160
15
votes
13
replies
6.5k
views
6 follow
Differential expression for two very different samples
RNA-Seq Statistics
updated 8.3 years ago by ★ 3.5k • written 8.3 years ago by ▴ 160
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