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Comment: Comment: annotating single-cell cluster from Drosophila melanogaster using SingleR?
2.4 years ago by Assa Yeroslaviz ★ 1.9k
1
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5
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1.9k
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annotating single-cell cluster from Drosophila melanogaster using SingleR?
SingleR celldex cell-type-annotations scRNA
updated 2.4 years ago by ★ 1.7k • written 2.4 years ago by ★ 1.9k
2
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2
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2.4k
views
6 follow
Why runing scDblFinder before and after removing low QC cells gives different results
singleCellExperiment scDblFinder SMART-Seq
updated 23 months ago by ▴ 260 • written 2.4 years ago by ★ 1.9k
0
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1
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3.1k
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what is the difference between FindVariableFeatures and FindAllMarkers?
Seurat single-cell FindVariableFeatures FindAllMarkers RNA-Seq
updated 2.4 years ago by 13k • written 2.4 years ago by ★ 1.9k
5
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2
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1.5k
views
ERCC normalization within DESeq2
normalization ERCC size.factors DESeq2
updated 2.5 years ago by 89k • written 2.5 years ago by ★ 1.9k
9
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5
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3.6k
views
DESeq2 model matrix not full rank
full-rank model-matrix deseq2
updated 2.5 years ago by 154k • written 4.4 years ago by ★ 1.9k
1
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1
reply
906
views
Can I add labels to (some) cells in a plotColData from scater?
single-cell-experiment plotColData scater
2.5 years ago by Assa Yeroslaviz ★ 1.9k
1
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0
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906
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Answer: Answer: Can I add labels to (some) cells in a plotColData from scater?
2.5 years ago by Assa Yeroslaviz ★ 1.9k
0
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0
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632
views
How to normalise ChIP-Seq samples using deeptools
bamCoverage deepTools
updated 2.4 years ago by 45k • written 2.6 years ago by ★ 1.9k
0
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1
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7.2k
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Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
2.7 years ago by Assa Yeroslaviz ★ 1.9k
0
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1
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7.2k
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Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
2.7 years ago by Assa Yeroslaviz ★ 1.9k
0
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0
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7.2k
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Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
2.7 years ago by Assa Yeroslaviz ★ 1.9k
0
votes
2
replies
7.2k
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Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
2.7 years ago by Assa Yeroslaviz ★ 1.9k
0
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0
replies
7.2k
views
Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
2.7 years ago by Assa Yeroslaviz ★ 1.9k
11
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17
replies
7.2k
views
How do one analyze data from SMART-Seq stranded kit (v4)?
single-cell smart-seq
updated 2.7 years ago by ★ 7.8k • written 2.7 years ago by ★ 1.9k
0
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0
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7.2k
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Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
2.7 years ago by Assa Yeroslaviz ★ 1.9k
0
votes
2
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7.2k
views
Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
2.7 years ago by Assa Yeroslaviz ★ 1.9k
0
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0
replies
722
views
bamComparing ChIp-Seq samples with strange coverage between chipped and Input
normalization bamCompare deepTools
updated 2.4 years ago by 45k • written 2.7 years ago by ★ 1.9k
4
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4
replies
7.2k
views
STAR aligner can't map too short reads
ribo-seq star
updated 2.8 years ago by 22k • written 2.8 years ago by ★ 1.9k
1
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1
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2.1k
views
Comment: Comment: How to calculate the offset for a riboseq experiment
2.9 years ago by Assa Yeroslaviz ★ 1.9k
4
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3
replies
2.1k
views
How to calculate the offset for a riboseq experiment
sequencing p-site riboseq offset
updated 2.9 years ago by ▴ 450 • written 2.9 years ago by ★ 1.9k
0
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0
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2.7k
views
Comment: Comment: How to interpret the nine-square plot from mageckFlute
2.9 years ago by Assa Yeroslaviz ★ 1.9k
0
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0
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2.7k
views
Comment: Comment: How to interpret the nine-square plot from mageckFlute
2.9 years ago by Assa Yeroslaviz ★ 1.9k
5
votes
4
replies
2.7k
views
How to interpret the nine-square plot from mageckFlute
mageck mageckFlute squareView scatterplot
2.9 years ago by Assa Yeroslaviz ★ 1.9k
0
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1
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1.7k
views
Comment: Comment: Need help understanding GEO data structure
3.0 years ago by Assa Yeroslaviz ★ 1.9k
0
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1
reply
1.7k
views
Comment: Comment: Need help understanding GEO data structure
3.0 years ago by Assa Yeroslaviz ★ 1.9k
1
vote
5
replies
1.7k
views
Need help understanding GEO data structure
Run-Selector GEO gene-expression-omnibus
updated 3.0 years ago by 154k • written 3.0 years ago by ★ 1.9k
4
votes
2
replies
1.2k
views
How to extract min and max values of a gene from different columns
group_by tibble tidyverse
updated 3.0 years ago by 15k • written 3.0 years ago by ★ 1.9k
0
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0
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935
views
Comment: Comment: expanding a table by duplicating rows of a specific pattern
3.1 years ago by Assa Yeroslaviz ★ 1.9k
3
votes
2
replies
935
views
expanding a table by duplicating rows of a specific pattern
tidyyverse dplyr R data.frame
3.1 years ago by Assa Yeroslaviz ★ 1.9k
0
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0
replies
5.4k
views
Comment: Comment: Dealing with nanopore fast5 files compressed with vbz
3.2 years ago by Assa Yeroslaviz ★ 1.9k
0
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0
replies
1.1k
views
Comment: Comment: Identifying binding sequences of a specific protein to its target
3.2 years ago by Assa Yeroslaviz ★ 1.9k
2
votes
3
replies
1.1k
views
Identifying binding sequences of a specific protein to its target
transcription-factor-binding-site gene-regulation transcription-factor
3.2 years ago by Assa Yeroslaviz ★ 1.9k
0
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0
replies
1.1k
views
Comment: Comment: Ca you help me understand the Nanopore fastqc results?
3.5 years ago by Assa Yeroslaviz ★ 1.9k
0
votes
2
replies
1.1k
views
Ca you help me understand the Nanopore fastqc results?
pycoQC long-read-seq nanopore fastqc
3.5 years ago by Assa Yeroslaviz ★ 1.9k
8
votes
7
replies
5.7k
views
Help me understand the Nanopore fastqc results
long-read-seq nanopore fastqc
updated 3.5 years ago by 103k • written 3.5 years ago by ★ 1.9k
0
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1
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5.7k
views
Comment: Comment: Help me understand the Nanopore fastqc results
3.5 years ago by Assa Yeroslaviz ★ 1.9k
0
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1
reply
5.7k
views
Comment: Comment: Help me understand the Nanopore fastqc results
3.5 years ago by Assa Yeroslaviz ★ 1.9k
15
votes
11
replies
10k
views
6 follow
filter out fasta File by pattern
pattern fasta awk sed regexp
updated 3.5 years ago by 21k • written 10.7 years ago by ★ 1.9k
0
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0
replies
620
views
pQTL analysis
plink GWAS pQTL linkage-disequilibrium
3.7 years ago by Assa Yeroslaviz ★ 1.9k
0
votes
0
replies
676
views
Understanding DEXSeq results
dexseq normalization counts
3.7 years ago by Assa Yeroslaviz ★ 1.9k
3
votes
1
reply
853
views
Basic understanding of Hi-C and interacion (contact-) maps
TADs interactions contact-maps AB-compartments HiC
updated 3.8 years ago by 89k • written 3.8 years ago by ★ 1.9k
1
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1
reply
2.2k
views
Comment: Comment: Online training - Snakemake: Reproducible and Scalable Bioinformatic Workflows
3.9 years ago by Assa Yeroslaviz ★ 1.9k
0
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1
reply
7.8k
views
Comment: Comment: How do I compare reads between two bam file?
4.1 years ago by Assa Yeroslaviz ★ 1.9k
0
votes
1
reply
7.8k
views
Comment: Comment: How do I compare reads between two bam file?
4.1 years ago by Assa Yeroslaviz ★ 1.9k
5
votes
5
replies
7.8k
views
How do I compare reads between two bam file?
samtools reads bam compare
updated 4.1 years ago by 166k • written 4.1 years ago by ★ 1.9k
0
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0
replies
13k
views
Comment: Comment: How Find Genes On Specific Positions
4.1 years ago by Assa Yeroslaviz ★ 1.9k
0
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0
replies
3.6k
views
Comment: Comment: DESeq2 model matrix not full rank
4.4 years ago by Assa Yeroslaviz ★ 1.9k
1
vote
0
replies
2.4k
views
Comment: Comment: DESeq2 comparison two cell types and two genotypes
4.5 years ago by Assa Yeroslaviz ★ 1.9k
2
votes
1
reply
2.7k
views
Comment: Comment: Failing to run tblastn
4.5 years ago by Assa Yeroslaviz ★ 1.9k
622 results • Page 3 of 13
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