Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
0
votes
2
replies
1.9k
views
Comment:
Comment: remove unmapped reads on a specific chromosome only
3.7 years ago by
firatuyulur
▴ 320
0
votes
1
reply
1.9k
views
Comment:
Comment: remove unmapped reads on a specific chromosome only
3.7 years ago by
firatuyulur
▴ 320
0
votes
7
replies
1.9k
views
remove unmapped reads on a specific chromosome only
bam
remove
unmapped
updated 3.7 years ago by
i.sudbery
20k • written 3.7 years ago by
firatuyulur
▴ 320
1
vote
0
replies
50k
views
Comment:
C: Bam File: Change Chromosome Notation
3.8 years ago by
firatuyulur
▴ 320
0
votes
1
reply
1.2k
views
Comment:
C: genome in IGV session file
4.4 years ago by
firatuyulur
▴ 320
2
votes
2
replies
2.4k
views
finding unique mutations from a multi-sample VCF
SNP
vcf
updated 4.6 years ago by
Biostar
20 • written 7.7 years ago by
firatuyulur
▴ 320
0
votes
0
replies
988
views
Comment:
C: str handling in python
5.1 years ago by
firatuyulur
▴ 320
0
votes
0
replies
4.6k
views
Answer:
A: I need allele copy number information for running PyClone
5.2 years ago by
firatuyulur
▴ 320
2
votes
1
reply
1.9k
views
Answer:
A: equal distance between groups in a barplot
6.4 years ago by
firatuyulur
▴ 320
1
vote
1
reply
4.4k
views
Comment:
C: removing outliers before running DESeq2
6.4 years ago by
firatuyulur
▴ 320
0
votes
1
reply
1.3k
views
Comment:
C: size of the pathways for analysis and filtration
6.4 years ago by
firatuyulur
▴ 320
1
vote
3
replies
1.3k
views
size of the pathways for analysis and filtration
pathways
RNA-Seq
enrichment
6.4 years ago by
firatuyulur
▴ 320
1
vote
1
reply
9.4k
views
Answer:
A: rRNA remove from RNAseq data
6.4 years ago by
firatuyulur
▴ 320
0
votes
0
replies
1.3k
views
Normalizing count data with several treatment dosages
RNA-Seq
normalization
deseq2
edgeR
QC
6.7 years ago by
firatuyulur
▴ 320
0
votes
1
reply
1.3k
views
comparing DEGs with same treatment but different control batch
deseq2
RNA-Seq
statistics
correlation
updated 6.8 years ago by
swbarnes2
14k • written 6.8 years ago by
firatuyulur
▴ 320
0
votes
0
replies
2.3k
views
Comment:
C: plotting an expression data in heat map/ hierarchical clustering
6.8 years ago by
firatuyulur
▴ 320
1
vote
1
reply
8.7k
views
Answer:
A: ATAC-seq: differential peaks using macs2 bdgdiff yields strange results
6.8 years ago by
firatuyulur
▴ 320
9
votes
3
replies
3.6k
views
enhancer RNA counting from RNASeq data
RNA-Seq
enhancer RNA
read counts
updated 6.8 years ago by
Ming Lu
▴ 30 • written 8.0 years ago by
firatuyulur
▴ 320
0
votes
1
reply
9.3k
views
Answer:
A: Filter by Fold change in DESeq2
7.3 years ago by
firatuyulur
▴ 320
1
vote
1
reply
2.8k
views
Comment:
C: Optimization of RNA-Seq data mapping with tophat2
7.3 years ago by
firatuyulur
▴ 320
0
votes
0
replies
2.8k
views
Answer:
A: From bam files to isoform read counts
7.3 years ago by
firatuyulur
▴ 320
0
votes
0
replies
5.2k
views
Comment:
C: macs2 normalization on broadPeak
7.4 years ago by
firatuyulur
▴ 320
0
votes
0
replies
5.2k
views
Comment:
C: macs2 normalization on broadPeak
7.4 years ago by
firatuyulur
▴ 320
0
votes
1
reply
5.2k
views
Comment:
C: macs2 normalization on broadPeak
7.4 years ago by
firatuyulur
▴ 320
4
votes
5
replies
5.2k
views
macs2 normalization on broadPeak
callpeak
atac-seq
macs2
updated 18 months ago by
Ram
44k • written 7.4 years ago by
firatuyulur
▴ 320
0
votes
0
replies
2.6k
views
Comment:
C: Zero expression in cuffdiff
7.4 years ago by
firatuyulur
▴ 320
1
vote
1
reply
1.7k
views
rnaseq data vs. phenotype
RNA-Seq
deseq2
tophat2
7.4 years ago by
firatuyulur
▴ 320
1
vote
3
replies
3.4k
views
Comment:
C: LASTZ does not accept/like "-" (dash) in Fasta file
7.5 years ago by
firatuyulur
▴ 320
1
vote
1
reply
9.9k
views
Answer:
A: Threshold of removing genes with low counts ?
7.6 years ago by
firatuyulur
▴ 320
1
vote
1
reply
3.0k
views
Comment:
C: Widening the distances between PCA vectors in PCA a biplot
7.6 years ago by
firatuyulur
▴ 320
2
votes
0
replies
4.5k
views
Answer:
A: I am a student, what can i do with 23andme raw data?
7.7 years ago by
firatuyulur
▴ 320
4
votes
0
replies
3.2k
views
Answer:
A: Plus and minus strands plotted together
7.8 years ago by
firatuyulur
▴ 320
5
votes
1
reply
3.2k
views
Plus and minus strands plotted together
GRO-Seq
ChIP-Seq
Figure
7.8 years ago by
firatuyulur
▴ 320
0
votes
1
reply
2.2k
views
Comment:
C: multiple SRR in a particular FTP conflict
7.8 years ago by
firatuyulur
▴ 320
0
votes
4
replies
2.2k
views
multiple SRR in a particular FTP conflict
ChIP-Seq
updated 7.8 years ago by
EagleEye
7.6k • written 7.8 years ago by
firatuyulur
▴ 320
1
vote
0
replies
2.5k
views
rMATS readlength difference
rMATS
RNA-Seq
Splicing
7.8 years ago by
firatuyulur
▴ 320
1
vote
1
reply
2.9k
views
Comment:
C: RNA-Seq analysis with standard p-value
7.9 years ago by
firatuyulur
▴ 320
1
vote
0
replies
1.9k
views
Comment:
C: Cuffdiff output filtering based on significance
7.9 years ago by
firatuyulur
▴ 320
1
vote
1
reply
1.9k
views
Answer:
A: Cuffdiff output filtering based on significance
7.9 years ago by
firatuyulur
▴ 320
5
votes
3
replies
2.0k
views
Methylation levels at specific sites
ChIP-Seq
BED
Wiggle
updated 7.9 years ago by
Alex Reynolds
36k • written 7.9 years ago by
firatuyulur
▴ 320
0
votes
0
replies
2.0k
views
Comment:
C: Methylation levels at specific sites
7.9 years ago by
firatuyulur
▴ 320
0
votes
0
replies
1.8k
views
Answer:
A: differential expression analysis
7.9 years ago by
firatuyulur
▴ 320
1
vote
0
replies
3.5k
views
Answer:
A: How can I count one specific exon in RNA-seq data
7.9 years ago by
firatuyulur
▴ 320
0
votes
1
reply
3.8k
views
Comment:
C: replicates in edgeR and DESeq2
7.9 years ago by
firatuyulur
▴ 320
3
votes
1
reply
2.4k
views
Comment:
C: Is It Fastq Format
updated 7.9 years ago by
Michael
55k • written 7.9 years ago by
firatuyulur
▴ 320
0
votes
1
reply
2.4k
views
Comment:
C: Is It Fastq Format
7.9 years ago by
firatuyulur
▴ 320
0
votes
0
replies
2.9k
views
Comment:
C: differential gene expression analysis
7.9 years ago by
firatuyulur
▴ 320
0
votes
0
replies
2.4k
views
Answer:
A: Is It Fastq Format
7.9 years ago by
firatuyulur
▴ 320
2
votes
1
reply
3.1k
views
Answer:
A: Using Normalized values in Differential Expression Software
8.1 years ago by
firatuyulur
▴ 320
49 results • Page
1 of 1
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6