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2
votes
4
replies
7.2k
views
ballgown error: Rows of pData did not seem to be in the same order as the columns of the expression data.
RNA-Seq R
updated 3.6 years ago by • 0 • written 7.3 years ago by ▴ 100
12
votes
5
replies
12k
views
how to combine RNA seq data from 4 lanes
RNA-Seq
updated 5.5 years ago by ▴ 20 • written 8.1 years ago by ▴ 100
1
vote
3
replies
2.1k
views
Error for read density visualization
ChIP-Seq
updated 6.6 years ago by • 0 • written 8.0 years ago by ▴ 100
0
votes
1
reply
4.8k
views
Comment: C: STAR installation make error
6.9 years ago by jolin0701-dy ▴ 100
3
votes
9
replies
4.8k
views
STAR installation make error
software error
updated 6.9 years ago by 161k • written 6.9 years ago by ▴ 100
0
votes
0
replies
4.8k
views
Comment: C: STAR installation make error
6.9 years ago by jolin0701-dy ▴ 100
0
votes
0
replies
1.6k
views
Error at GBitVec: index 7 out of bounds (size 7)
rna-seq
7.3 years ago by jolin0701-dy ▴ 100
0
votes
1
reply
3.4k
views
Comment: C: Error for hisat2 index for human genome
7.4 years ago by jolin0701-dy ▴ 100
0
votes
4
replies
3.4k
views
Error for hisat2 index for human genome
rna-seq
updated 7.4 years ago by ★ 3.6k • written 7.4 years ago by ▴ 100
2
votes
2
replies
4.1k
views
cuffdiff error: Segmentation fault: 11
RNA-Seq
updated 7.4 years ago by 20 • written 7.5 years ago by ▴ 100
0
votes
1
reply
4.1k
views
Comment: C: how to take the subset of fastq reads in one specific chromosome
7.4 years ago by jolin0701-dy ▴ 100
0
votes
0
replies
4.1k
views
Comment: C: how to take the subset of fastq reads in one specific chromosome
7.4 years ago by jolin0701-dy ▴ 100
0
votes
6
replies
4.1k
views
how to take the subset of fastq reads in one specific chromosome
rna-seq
updated 7.4 years ago by ★ 1.2k • written 7.4 years ago by ▴ 100
0
votes
1
reply
6.4k
views
Comment: C: HISAT2-StringTie-Cuffdiff error: BAM record error: found spliced alignment witho
7.4 years ago by jolin0701-dy ▴ 100
2
votes
4
replies
6.4k
views
HISAT2-StringTie-Cuffdiff error: BAM record error: found spliced alignment without XS attribute
RNA-Seq
updated 7.4 years ago by ★ 3.6k • written 7.4 years ago by ▴ 100
4
votes
2
replies
3.7k
views
error in installing ballgown
R
updated 7.4 years ago by 141k • written 7.4 years ago by ▴ 100
3
votes
1
reply
5.1k
views
How to analyze RIP-seq data
RNA-Seq
updated 7.5 years ago by 20 • written 8.0 years ago by ▴ 100
0
votes
0
replies
2.2k
views
Comment: C: no XLOC gene_id or TCONS transcript_id in fpkm_tracking files
7.5 years ago by jolin0701-dy ▴ 100
0
votes
2
replies
2.2k
views
no XLOC gene_id or TCONS transcript_id in fpkm_tracking files
RNA-Seq
updated 7.5 years ago by ★ 1.6k • written 7.5 years ago by ▴ 100
0
votes
0
replies
4.1k
views
Comment: C: cuffdiff error: Segmentation fault: 11
7.5 years ago by jolin0701-dy ▴ 100
0
votes
0
replies
3.4k
views
Answer: A: Error: duplicate GFF ID 'ENSMUST00000105372' encountered! [FAILED] Error: could
7.5 years ago by jolin0701-dy ▴ 100
2
votes
2
replies
3.4k
views
Error: duplicate GFF ID 'ENSMUST00000105372' encountered! [FAILED] Error: could not execute cuffcompare
rna-seq
7.5 years ago by jolin0701-dy ▴ 100
0
votes
1
reply
1.3k
views
how to keep transcript ids
RNA-Seq
7.9 years ago by jolin0701-dy ▴ 100
4
votes
3
replies
1.6k
views
no significant genes with differential expression due to 1 vs 1 sample comparison
RNA-Seq
updated 7.9 years ago by 47k • written 7.9 years ago by ▴ 100
0
votes
0
replies
3.2k
views
Comment: C: error: segment-based junction search failed with err =-5 Reason: image not found
7.9 years ago by jolin0701-dy ▴ 100
0
votes
2
replies
3.2k
views
Comment: C: error: segment-based junction search failed with err =-5 Reason: image not found
7.9 years ago by jolin0701-dy ▴ 100
0
votes
5
replies
3.2k
views
error: segment-based junction search failed with err =-5 Reason: image not found
RNA-Seq
updated 7.9 years ago by 141k • written 7.9 years ago by ▴ 100
0
votes
1
reply
4.6k
views
Comment: C: fasta and bowtie index file download
7.9 years ago by jolin0701-dy ▴ 100
1
vote
9
replies
4.6k
views
fasta and bowtie index file download
RNA-Seq
updated 7.9 years ago by ★ 1.1k • written 7.9 years ago by ▴ 100
0
votes
0
replies
4.6k
views
Comment: C: fasta and bowtie index file download
7.9 years ago by jolin0701-dy ▴ 100
0
votes
1
reply
4.6k
views
Comment: C: fasta and bowtie index file download
7.9 years ago by jolin0701-dy ▴ 100
0
votes
1
reply
2.4k
views
error for toGRanges
ChIP-Seq
updated 8.0 years ago by 13k • written 8.0 years ago by ▴ 100
0
votes
0
replies
3.2k
views
macs2 callpeak error
ChIP-Seq
8.0 years ago by jolin0701-dy ▴ 100
2
votes
1
reply
3.6k
views
The pipeline for analysis ChIP seq and RIP seq
ChIP-Seq
updated 8.0 years ago by ★ 5.2k • written 8.0 years ago by ▴ 100
5
votes
3
replies
2.2k
views
Are the BAM files from tophat and bowtie-samtools the same?
RNA-Seq ChIP-Seq
updated 8.0 years ago by 13k • written 8.0 years ago by ▴ 100
1
vote
1
reply
4.5k
views
cuffmerge warnings Warning: couldn't find fasta record for 'chr1_GL456211_random'!
RNA-Seq
updated 8.0 years ago by 104k • written 8.0 years ago by ▴ 100
0
votes
0
replies
1.6k
views
Comment: C: error with bowtie2
8.0 years ago by jolin0701-dy ▴ 100
1
vote
3
replies
1.6k
views
error with bowtie2
RNA-Seq
8.1 years ago by jolin0701-dy ▴ 100
0
votes
1
reply
1.6k
views
Comment: A: error with bowtie2
8.1 years ago by jolin0701-dy ▴ 100
0
votes
0
replies
2.2k
views
Comment: C: microRNA seq vs RNA seq
8.1 years ago by jolin0701-dy ▴ 100
0
votes
1
reply
2.2k
views
Comment: C: microRNA seq vs RNA seq
8.1 years ago by jolin0701-dy ▴ 100
1
vote
4
replies
2.2k
views
microRNA seq vs RNA seq
RNA-Seq
8.1 years ago by jolin0701-dy ▴ 100
0
votes
0
replies
3.2k
views
Comment: C: error from samtools view -h
8.1 years ago by jolin0701-dy ▴ 100
2
votes
2
replies
3.2k
views
error from samtools view -h
RNA-Seq
updated 8.1 years ago by 22k • written 8.1 years ago by ▴ 100
2
votes
2
replies
4.9k
views
error of samtools sort
RNA-Seq
updated 8.1 years ago by ★ 4.0k • written 8.1 years ago by ▴ 100
0
votes
1
reply
3.7k
views
Comment: C: how to prepare a contaminant list for Bowtie2
8.1 years ago by jolin0701-dy ▴ 100
0
votes
1
reply
3.7k
views
Comment: C: how to prepare a contaminant list for Bowtie2
8.1 years ago by jolin0701-dy ▴ 100
1
vote
2
replies
3.7k
views
Answer: A: how to prepare a contaminant list for Bowtie2
8.1 years ago by jolin0701-dy ▴ 100
2
votes
11
replies
3.7k
views
how to prepare a contaminant list for Bowtie2
RNA-Seq
8.1 years ago by jolin0701-dy ▴ 100
0
votes
1
reply
3.7k
views
Answer: A: how to prepare a contaminant list for Bowtie2
8.1 years ago by jolin0701-dy ▴ 100
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