Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
1
vote
0
replies
4.8k
views
Answer: A: Can you assemble with merged paired end reads and unmatched reads as "single end
7.1 years ago by O.rka ▴ 750
6
votes
10
replies
4.8k
views
Can you assemble with merged paired end reads and unmatched reads as "single ended" reads?
Assembly
updated 4.4 years ago by 154k • written 7.1 years ago by ▴ 750
0
votes
1
reply
4.8k
views
Comment: C: Can you assemble with merged paired end reads and unmatched reads as "single end
7.1 years ago by O.rka ▴ 750
2
votes
2
replies
2.4k
views
Extracted mapped shotgun metagenomic reads to reference genome. SPAdes or metaSPAdes for de-novo assembly?
assembly metagenomics de-novo
updated 7.1 years ago by 35k • written 7.1 years ago by ▴ 750
0
votes
1
reply
4.8k
views
Comment: C: Can you assemble with merged paired end reads and unmatched reads as "single end
7.1 years ago by O.rka ▴ 750
4
votes
2
replies
2.7k
views
How to interpret sam file generated from BBMap?
alignment sequencing
updated 7.1 years ago by 15k • written 7.1 years ago by ▴ 750
1
vote
4
replies
2.6k
views
How to extract reads that match k-mer profiles from a collection of sequences?
sequencing
updated 7.1 years ago by 154k • written 7.1 years ago by ▴ 750
0
votes
0
replies
1.3k
views
Why does clustalo guidetree have negative values for branch lengths?
clustalo alignment tree clustal
7.2 years ago by O.rka ▴ 750
0
votes
0
replies
2.0k
views
How associate raw reads with MetaCyc/Taxonomy from HUMAnN2?
humann2 transcriptomics metacyc humann
7.3 years ago by O.rka ▴ 750
0
votes
1
reply
3.1k
views
Comment: A: Which method is good for getting logFC for pairwise comparsion of replicates?
7.5 years ago by O.rka ▴ 750
1
vote
0
replies
1.1k
views
Find list, flatfiles, or database of all gram + or - bacteria?
taxonomy
7.6 years ago by O.rka ▴ 750
0
votes
2
replies
4.3k
views
Comment: C: How to merge quality trimmed interlaced reads?
7.6 years ago by O.rka ▴ 750
3
votes
1
reply
1.3k
views
What is the minimum number of non-ribosomal reads that can be used for E. coli transcriptomics?
RNA-Seq
7.6 years ago by O.rka ▴ 750
6
votes
5
replies
9.7k
views
Is logFC in edgeR base e, 2, or 10?
edgeR logfc differential bioconductor
updated 7.7 years ago by 105k • written 7.7 years ago by ▴ 750
0
votes
1
reply
9.2k
views
Comment: C: How to compare 2 separate coexpression networks each with the same genes?
7.7 years ago by O.rka ▴ 750
0
votes
1
reply
9.2k
views
Comment: C: How to compare 2 separate coexpression networks each with the same genes?
7.7 years ago by O.rka ▴ 750
0
votes
1
reply
9.2k
views
Comment: C: How to compare 2 separate coexpression networks each with the same genes?
7.7 years ago by O.rka ▴ 750
0
votes
1
reply
9.2k
views
Comment: C: How to compare 2 separate coexpression networks each with the same genes?
7.7 years ago by O.rka ▴ 750
0
votes
1
reply
9.2k
views
Comment: C: How to compare 2 separate coexpression networks each with the same genes?
7.7 years ago by O.rka ▴ 750
0
votes
1
reply
9.2k
views
Comment: C: How to compare 2 separate coexpression networks each with the same genes?
7.7 years ago by O.rka ▴ 750
0
votes
0
replies
9.2k
views
Comment: C: How to compare 2 separate coexpression networks each with the same genes?
7.7 years ago by O.rka ▴ 750
11
votes
27
replies
9.2k
views
How to compare 2 separate coexpression networks each with the same genes?
coexpression network gene phenotype
7.7 years ago by O.rka ▴ 750
0
votes
2
replies
9.2k
views
Comment: C: How to compare 2 separate coexpression networks each with the same genes?
7.7 years ago by O.rka ▴ 750
0
votes
1
reply
9.2k
views
Comment: C: How to compare 2 separate coexpression networks each with the same genes?
7.7 years ago by O.rka ▴ 750
0
votes
2
replies
9.2k
views
Comment: C: How to compare 2 separate coexpression networks each with the same genes?
7.7 years ago by O.rka ▴ 750
0
votes
1
reply
2.5k
views
Where to download gff3 file for EcoCyc data?
genes assembly gff3 ecoli
updated 7.7 years ago by ▴ 230 • written 7.8 years ago by ▴ 750
0
votes
4
replies
2.2k
views
How to get descriptions for rs* SNP identifiers?
SNP genome vcf annotation
updated 7.7 years ago by ★ 19k • written 7.7 years ago by ▴ 750
0
votes
0
replies
2.2k
views
Comment: C: How to get descriptions for rs* SNP identifiers?
7.7 years ago by O.rka ▴ 750
0
votes
0
replies
12k
views
Comment: C: How to get SNP identifiers from VCF file?
7.7 years ago by O.rka ▴ 750
0
votes
1
reply
12k
views
Comment: C: How to get SNP identifiers from VCF file?
7.7 years ago by O.rka ▴ 750
0
votes
1
reply
12k
views
Comment: C: How to get SNP identifiers from VCF file?
7.7 years ago by O.rka ▴ 750
0
votes
1
reply
12k
views
Comment: C: How to get SNP identifiers from VCF file?
7.7 years ago by O.rka ▴ 750
0
votes
1
reply
12k
views
Comment: C: How to get SNP identifiers from VCF file?
7.7 years ago by O.rka ▴ 750
0
votes
1
reply
12k
views
Comment: C: How to get SNP identifiers from VCF file?
7.7 years ago by O.rka ▴ 750
0
votes
1
reply
12k
views
Comment: C: How to get SNP identifiers from VCF file?
7.7 years ago by O.rka ▴ 750
11
votes
15
replies
12k
views
How to get SNP identifiers from VCF file?
SNP vcf genome database clinical
updated 7.7 years ago by ★ 5.2k • written 7.7 years ago by ▴ 750
0
votes
0
replies
1.5k
views
Do counts need to be filtered for edgeR to properly work on metatranscriptome?
RNA-Seq metagenomics metatranscriptomics edgeR
7.8 years ago by O.rka ▴ 750
0
votes
0
replies
1.7k
views
Set percent identity and percent length covered in HISAT2 mapping
mapping hisat2 read sequencing genomics
8.2 years ago by O.rka ▴ 750
0
votes
0
replies
28k
views
Comment: C: Efficiently Iterating Over Fastq Records From Python
8.2 years ago by O.rka ▴ 750
1
vote
1
reply
2.6k
views
How to download all transcripts from Mouse with exons as upper case and introns as lower case?
RNA-Seq database genome mouse sequences
8.2 years ago by O.rka ▴ 750
0
votes
0
replies
1.5k
views
Functional information from de-novo orf calling in genome bins?
genomics orf functional properties de-novo
8.4 years ago by O.rka ▴ 750
0
votes
0
replies
5.2k
views
Comment: C: binary phenotype or discrete traits in wgcna analysis
8.5 years ago by O.rka ▴ 750
0
votes
0
replies
3.7k
views
Answer: A: Biopython hmmscan parser
8.6 years ago by O.rka ▴ 750
1
vote
1
reply
6.9k
views
What is `soft thresholding` with WGCNA?
wgcna network analysis correlation threshold
updated 8.6 years ago by ▴ 110 • written 9.2 years ago by ▴ 750
0
votes
0
replies
4.0k
views
Comment: C: any recommended tools for batch effect and normalization not written in R?
8.6 years ago by O.rka ▴ 750
0
votes
0
replies
63k
views
Comment: C: Rpkm Calculation For Genes
8.7 years ago by O.rka ▴ 750
2
votes
4
replies
4.1k
views
Advice on assembling very large metagenomic dataset?
metagenomics assembly genomics big-data large
updated 8.7 years ago by ▴ 30 • written 8.7 years ago by ▴ 750
0
votes
0
replies
2.5k
views
Weighted network (WGCNA) and Hive plot. Too many edges?
wgcna RNA-Seq network gene-expression hive plot
8.8 years ago by O.rka ▴ 750
0
votes
1
reply
5.4k
views
Comment: C: Displaying tree with attributes as Image with ETE3
9.2 years ago by O.rka ▴ 750
1
vote
1
reply
1.6k
views
Ways to put biological meaning on a group of microorganisms?
microbiome metagenomics microbial bacteria
updated 9.2 years ago by 27k • written 9.2 years ago by ▴ 750
410 results • Page 8 of 9
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6