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33k
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Comment: C: Help a graduate student going into Bioinformatics looking for a new personal lap
8.7 years ago by Biomonika (Noolean) 3.2k
0
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1
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1.8k
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Comment: Comment: Assessing diversity of random oligonucleotides
updated 18 months ago by 43k • written 8.7 years ago by 3.2k
0
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1
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2.8k
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Comment: C: Filtering BLAST results.
8.7 years ago by Biomonika (Noolean) 3.2k
0
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1
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2.6k
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How to generate bam files for Quiver
quiver PacBio
updated 18 months ago by 43k • written 8.7 years ago by 3.2k
1
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1
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10k
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Comment: Comment: Truncated SAM file - odd characters
updated 18 months ago by 43k • written 8.7 years ago by 3.2k
1
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1
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10k
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Answer: Answer: Truncated SAM file - odd characters
updated 18 months ago by 43k • written 8.7 years ago by 3.2k
0
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0
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1.6k
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Comment: C: How to prepare RNA-seq data for Piano?
8.7 years ago by Biomonika (Noolean) 3.2k
1
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1
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16k
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Comment: Comment: TRIMMOMATRIC Nextera trimming
updated 18 months ago by 43k • written 8.8 years ago by 3.2k
1
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1
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1.5k
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whole genome alignments accompanying papers - where to deposit them?
alignments database
updated 17 months ago by 43k • written 8.9 years ago by 3.2k
0
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0
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2.1k
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Comment: Comment: what is the cases when the insert size between mate pairs is zero?
updated 17 months ago by 43k • written 8.8 years ago by 3.2k
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2
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2.1k
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Comment: Comment: what is the cases when the insert size between mate pairs is zero?
updated 17 months ago by 43k • written 8.8 years ago by 3.2k
0
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0
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2.6k
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Comment: Comment: reviewing a paper with software/code I cannot run
updated 16 months ago by 43k • written 8.9 years ago by 3.2k
7
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9
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2.6k
views
8 follow
Forum: reviewing a paper with software/code I cannot run
submission code-review open-access
updated 16 months ago by 43k • written 8.9 years ago by 3.2k
17
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23
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9.0k
views
13 follow
How To Assemble Chloroplast Genome?
genome assembly
updated 15 months ago by 43k • written 12.0 years ago by 3.2k
0
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0
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6.0k
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Comment: Comment: Short Sequence BLAST Search with Gaps
updated 16 months ago by 43k • written 8.9 years ago by 3.2k
0
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1
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6.0k
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Comment: C: Short Sequence BLAST Search with Gaps
8.9 years ago by Biomonika (Noolean) 3.2k
1
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1
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1.6k
views
sequencing through heterochromatin (e.g. with PacBio)
heterochromatin PacBio sequencing
updated 8.9 years ago by 35k • written 8.9 years ago by 3.2k
0
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2
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12k
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Comment: Comment: Flower plot in R ?
updated 16 months ago by 43k • written 8.9 years ago by 3.2k
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0
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1.5k
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Answer: Answer: when the local alignment tends to work as global alignment?
updated 16 months ago by 43k • written 8.9 years ago by 3.2k
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0
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3.0k
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Comment: Comment: Using RNA-seq expression data in a classification model
updated 16 months ago by 43k • written 8.9 years ago by 3.2k
0
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2
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4.8k
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Comment: C: Trimmomatics parameters for WGS data quality improvement
8.9 years ago by Biomonika (Noolean) 3.2k
1
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1
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2.5k
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Answer: Answer: visualization of gene-miRNA interaction
updated 16 months ago by 43k • written 8.9 years ago by 3.2k
0
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0
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2.3k
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Comment: C: Single gene circos plot possible?
9.0 years ago by Biomonika (Noolean) 3.2k
0
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0
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2.6k
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Comment: Comment: cn.mops calling copy number 1 state as CNV using the haplocn.mops function in an
updated 2.3 years ago by 43k • written 9.0 years ago by 3.2k
1
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4
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5.0k
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Mapping mate-pairs reads with bowtie2
aligner mate-pair bowtie2
updated 15 months ago by 43k • written 9.0 years ago by 3.2k
1
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0
replies
33k
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Comment: Comment: Help a graduate student going into Bioinformatics looking for a new personal lap
updated 19 months ago by 43k • written 9.0 years ago by 3.2k
4
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1
reply
2.0k
views
span of GFF file
GFF span
updated 3.1 years ago by 43k • written 9.1 years ago by 3.2k
0
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0
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3.1k
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Comment: Comment: Command to estimate how long local blastx take to finish the job?
updated 22 months ago by 43k • written 9.1 years ago by 3.2k
4
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1
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4.2k
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Answer: Answer: How to find out the reverse complement of DNA from each FASTA formated sequence
updated 22 months ago by 43k • written 9.1 years ago by 3.2k
0
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1
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13k
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Comment: C: biomart gene coordinates do not correspond to genome browser
9.1 years ago by Biomonika (Noolean) 3.2k
1
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0
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3.0k
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Comment: C: How to compare assembly from Trinity and Velvet/Oases
9.1 years ago by Biomonika (Noolean) 3.2k
0
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2
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2.2k
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per bp depth intersected with gff file
bam bedtools depth coverage
updated 9.1 years ago by 104k • written 9.1 years ago by 3.2k
0
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0
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4.7k
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Comment: Comment: WGBS data analysis in Galaxy?
updated 22 months ago by 43k • written 9.1 years ago by 3.2k
0
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0
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1.6k
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Comment: Comment: shall we do PCA analysis in target region sequencing project
updated 22 months ago by 43k • written 9.1 years ago by 3.2k
0
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0
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2.5k
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Answer: A: flip mate-pair libraries from rf to fr
9.1 years ago by Biomonika (Noolean) 3.2k
4
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6
replies
4.4k
views
How To Identify Genes In Transposable Elements
genes orf
updated 9.1 years ago by 20 • written 10.8 years ago by 3.2k
0
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0
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9.7k
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Answer: Answer: Nice way to view primers amplicon on hg19
updated 23 months ago by 43k • written 9.1 years ago by 3.2k
2
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1
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2.9k
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Answer: Answer: Ideal coverage required for PacBio error correction using HGAP
updated 23 months ago by 43k • written 9.1 years ago by 3.2k
0
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0
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1.9k
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Comment: C: How to generate pair-wise alignments for all the orthologous gene pairs at once?
9.1 years ago by Biomonika (Noolean) 3.2k
0
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0
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3.7k
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Comment: C: How visualize better way the output data from Bayescan?
9.1 years ago by Biomonika (Noolean) 3.2k
0
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0
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4.1k
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Comment: C: lowercase fasta coordinates to GFF
9.1 years ago by Biomonika (Noolean) 3.2k
0
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2
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4.1k
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Comment: C: lowercase fasta coordinates to GFF
9.1 years ago by Biomonika (Noolean) 3.2k
0
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0
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2.4k
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Comment: C: Exome sequencing and association
9.2 years ago by Biomonika (Noolean) 3.2k
0
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1
reply
4.6k
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Comment: C: DE analysis with [DESeq2] without replicates
9.2 years ago by Biomonika (Noolean) 3.2k
0
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0
replies
2.1k
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Download unspliced RefSeq genes
RefSeq GRCh38
updated 24 months ago by 43k • written 9.2 years ago by 3.2k
0
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1
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3.6k
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Comment: C: Why are there multiple RefSeq sequences occurring with the same name?
9.2 years ago by Biomonika (Noolean) 3.2k
0
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1
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5.5k
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Comment: C: Obtain conservation (or % ident) in a multiple sequence alignment
9.2 years ago by Biomonika (Noolean) 3.2k
1
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0
replies
1.8k
views
Answer: Answer: How to let the galaxy local instance run (eg. tophat) @ multi-thread mode?
updated 24 months ago by 43k • written 9.2 years ago by 3.2k
0
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1
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2.0k
views
Answer: A: rnastar in galaxy
9.2 years ago by Biomonika (Noolean) 3.2k
3
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1
reply
2.0k
views
Extract all members of particular gene family (including pseudogenes)
genes coordinate
updated 24 months ago by 43k • written 9.2 years ago by 3.2k
445 results • Page 3 of 9
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