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questions
1
vote
2
replies
3.0k
views
Visualize smooth ChIP peaks with Homer makeUCSCfile
homer
ucsc
ChIP-Seq
updated 17 months ago by
Hamidreza
• 0 • written 7.3 years ago by
varsha619
▴ 90
5
votes
14
replies
3.2k
views
Bowtie2 hg19 reference for gatk MuTect
gatk
bowtie2
updated 3.1 years ago by
aldhairmedico
▴ 70 • written 5.3 years ago by
varsha619
▴ 90
0
votes
8
replies
2.8k
views
UCSC itemRgb on column 9
ucsc
itemRgb
6.0 years ago by
varsha619
▴ 90
8
votes
13
replies
7.8k
views
STAR for chip-seq
star
ChIP-Seq
alignment
updated 6.4 years ago by
predeus
★ 2.0k • written 6.4 years ago by
varsha619
▴ 90
13
votes
10
replies
2.3k
views
fasta to bed format with more information that just chr locations
fasta to bed
updated 6.4 years ago by
Daniel
★ 4.0k • written 6.4 years ago by
varsha619
▴ 90
0
votes
2
replies
2.4k
views
using MACS2 with hg38
macs2
hg38
updated 6.6 years ago by
igor
13k • written 6.6 years ago by
varsha619
▴ 90
1
vote
7
replies
2.6k
views
bp overlap between multiple beds
bedtools
multiinter
venn
updated 6.7 years ago by
Alex Reynolds
35k • written 6.7 years ago by
varsha619
▴ 90
7
votes
14
replies
5.6k
views
wig files to bigwig using UCSC kent
wigtobigwig
updated 6.7 years ago by
genecats.ucsc
▴ 580 • written 6.7 years ago by
varsha619
▴ 90
2
votes
2
replies
3.5k
views
bedops gff2bed error
bedops
gff2bed
updated 6.8 years ago by
Alex Reynolds
35k • written 6.8 years ago by
varsha619
▴ 90
3
votes
2
replies
2.9k
views
Does MACS score correlate with binding strength
macs
ChIP-Seq
updated 6.8 years ago by
Biostar
20 • written 6.9 years ago by
varsha619
▴ 90
3
votes
10
replies
4.0k
views
meme-chip command line usage error
meme-chip
6.9 years ago by
varsha619
▴ 90
1
vote
4
replies
4.6k
views
bedGraphToBigWig error - end coordinate bigger than chr
bedGraphToBigWig
macs2
updated 7.3 years ago by
Alex Reynolds
35k • written 7.3 years ago by
varsha619
▴ 90
0
votes
5
replies
3.2k
views
phastcon conservation score for chip seq peaks
phastcon
ChIP-Seq
7.5 years ago by
varsha619
▴ 90
0
votes
1
reply
1.6k
views
meme mast for overlapping sequences
meme
mast
motif
7.7 years ago by
varsha619
▴ 90
3
votes
6
replies
3.4k
views
Remove reads from fastq file
sequencing
updated 7.7 years ago by
GenoMax
146k • written 7.7 years ago by
varsha619
▴ 90
0
votes
5
replies
1.9k
views
TF motif half-site enrichment
motif
updated 7.8 years ago by
apa@stowers
▴ 600 • written 7.8 years ago by
varsha619
▴ 90
0
votes
6
replies
1.9k
views
mast meme output as bed
meme
mast
7.8 years ago by
varsha619
▴ 90
3
votes
2
replies
2.6k
views
MutSigCV output has p-value of 0
mutsigcv
updated 7.8 years ago by
poisonAlien
★ 3.2k • written 7.8 years ago by
varsha619
▴ 90
0
votes
0
replies
1.4k
views
Spacer length analysis using MEME
meme
motif
spacer
7.8 years ago by
varsha619
▴ 90
0
votes
4
replies
4.5k
views
Which ChIP-seq IgG to use?
ChIP-Seq
igg control
updated 8.0 years ago by
Mads Lerdrup
▴ 460 • written 8.0 years ago by
varsha619
▴ 90
5
votes
20
replies
8.9k
views
How to plot ChIP-seq Density vs Distance from TSS using Homer annoted files
ChIP-Seq
homer
8.2 years ago by
varsha619
▴ 90
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