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1
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2
replies
3.4k
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BUSCO - issue reading the fasta file
BUSCO RNA-Seq Assembly software error
updated 4.4 years ago by 20 • written 8.4 years ago by ▴ 150
4
votes
4
replies
2.7k
views
Great Python tool(s) for simulating fake/dummy VCF files?
SNP python
updated 4.7 years ago by 151k • written 4.7 years ago by ▴ 150
2
votes
3
replies
2.7k
views
Diamond annotation versus Kallisto/Sleuth
RNA-Seq blast rna-seq R sequencing
updated 6.6 years ago by 12k • written 8.2 years ago by ▴ 150
0
votes
1
reply
3.7k
views
Sleuth PCA plots - how to change axis to percentage?
R Sleuth RNA-Seq Kallisto PCA
updated 7.0 years ago by ▴ 970 • written 7.8 years ago by ▴ 150
7
votes
7
replies
4.6k
views
Cannot get efetch to download genome - what is wrong?
entrez genome efetch fasta
updated 7.2 years ago by 35k • written 7.2 years ago by ▴ 150
4
votes
3
replies
3.3k
views
Contig cutoff of 300 bp - why? (Trinity transcriptome assembly)
Trinity RNA-Seq Assembly Contigs
updated 7.5 years ago by ▴ 10 • written 7.5 years ago by ▴ 150
1
vote
2
replies
3.5k
views
DAVID gene enrichment - multiple Entrez IDs per gene symbol, what to do?
DAVID GO Gene-enrichment
7.6 years ago by BioBing ▴ 150
10
votes
13
replies
3.6k
views
How to split columns into rows based on gene ids in R?
R
updated 7.8 years ago by ★ 2.7k • written 7.8 years ago by ▴ 150
3
votes
2
replies
2.8k
views
Looking for recommendations of R package for GO enrichment analysis based on gene list and a Trinotate report
RNA-Seq R Trinotate GO
updated 7.8 years ago by ★ 1.6k • written 7.8 years ago by ▴ 150
5
votes
3
replies
3.0k
views
Best practises RNAseq - Sleuth vs. NA's in annotation
RNA-Seq R rna-seq
7.9 years ago by BioBing ▴ 150
0
votes
1
reply
3.2k
views
Kallisto/Sleuth - issue when using own annotations in the sleuth_prep() function
RNA-Seq R sleuth kallisto rna-seq
8.0 years ago by BioBing ▴ 150
5
votes
10
replies
5.8k
views
BLAST IDs into gene names? (Diamond)
R RNA-Seq Assembly gene blast
updated 8.0 years ago by 5.3k • written 8.0 years ago by ▴ 150
6
votes
8
replies
4.1k
views
Conflicting results with DESeq2 between versions
RNA-Seq R DESeq2 rna-seq
8.0 years ago by BioBing ▴ 150
0
votes
0
replies
3.1k
views
Modifications of graphs from Sleuth Object?
R RNA-Seq rna-seq
8.2 years ago by BioBing ▴ 150
7
votes
4
replies
3.0k
views
Normalization of RNAseq data and the use of de novo transcriptome
RNA-Seq rna-seq DGE denovo transcriptome
updated 8.3 years ago by ★ 1.2k • written 8.4 years ago by ▴ 150
4
votes
2
replies
14k
views
Trimmomatic - unknown trimmer?
RNA-Seq software error sequence next-gen
8.3 years ago by BioBing ▴ 150
0
votes
0
replies
1.1k
views
Is it possible to retrieve data from a Detonate run?
RNA-Seq Detonate Assembly sequencing next-gen
8.4 years ago by BioBing ▴ 150
4
votes
5
replies
6.7k
views
Where to find the Trinity assembly statistics?
RNA-Seq Trinity denovo
updated 8.4 years ago by ★ 2.7k • written 8.4 years ago by ▴ 150
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