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1
vote
2
replies
2.5k
views
BUSCO - issue reading the fasta file
BUSCO RNA-Seq Assembly software error
updated 2.0 years ago by 20 • written 6.0 years ago by ▴ 150
4
votes
4
replies
1.3k
views
Great Python tool(s) for simulating fake/dummy VCF files?
SNP python
updated 2.3 years ago by 125k • written 2.3 years ago by ▴ 150
2
votes
3
replies
1.9k
views
Diamond annotation versus Kallisto/Sleuth
RNA-Seq blast rna-seq R sequencing
updated 4.2 years ago by 11k • written 5.8 years ago by ▴ 150
0
votes
1
reply
2.9k
views
Sleuth PCA plots - how to change axis to percentage?
R Sleuth RNA-Seq Kallisto PCA
updated 4.6 years ago by ▴ 930 • written 5.5 years ago by ▴ 150
7
votes
7
replies
2.8k
views
Cannot get efetch to download genome - what is wrong?
entrez genome efetch fasta
updated 4.9 years ago by 34k • written 4.9 years ago by ▴ 150
4
votes
3
replies
2.0k
views
Contig cutoff of 300 bp - why? (Trinity transcriptome assembly)
Trinity RNA-Seq Assembly Contigs
updated 5.1 years ago by ▴ 10 • written 5.2 years ago by ▴ 150
1
vote
2
replies
2.4k
views
DAVID gene enrichment - multiple Entrez IDs per gene symbol, what to do?
DAVID GO Gene-enrichment
5.2 years ago by BioBing ▴ 150
10
votes
13
replies
1.9k
views
How to split columns into rows based on gene ids in R?
R
updated 5.4 years ago by ★ 2.7k • written 5.4 years ago by ▴ 150
3
votes
2
replies
2.1k
views
Looking for recommendations of R package for GO enrichment analysis based on gene list and a Trinotate report
RNA-Seq R Trinotate GO
updated 5.4 years ago by ★ 1.6k • written 5.4 years ago by ▴ 150
5
votes
3
replies
2.0k
views
Best practises RNAseq - Sleuth vs. NA's in annotation
RNA-Seq R rna-seq
5.6 years ago by BioBing ▴ 150
0
votes
1
reply
2.5k
views
Kallisto/Sleuth - issue when using own annotations in the sleuth_prep() function
RNA-Seq R sleuth kallisto rna-seq
5.6 years ago by BioBing ▴ 150
5
votes
10
replies
3.7k
views
BLAST IDs into gene names? (Diamond)
R RNA-Seq Assembly gene blast
updated 5.7 years ago by 5.2k • written 5.7 years ago by ▴ 150
6
votes
8
replies
3.0k
views
Conflicting results with DESeq2 between versions
RNA-Seq R DESeq2 rna-seq
5.7 years ago by BioBing ▴ 150
0
votes
0
replies
2.5k
views
Modifications of graphs from Sleuth Object?
R RNA-Seq rna-seq
5.9 years ago by BioBing ▴ 150
7
votes
4
replies
2.0k
views
Normalization of RNAseq data and the use of de novo transcriptome
RNA-Seq rna-seq DGE denovo transcriptome
updated 5.9 years ago by ★ 1.2k • written 6.0 years ago by ▴ 150
4
votes
2
replies
10k
views
Trimmomatic - unknown trimmer?
RNA-Seq software error sequence next-gen
5.9 years ago by BioBing ▴ 150
0
votes
0
replies
777
views
Is it possible to retrieve data from a Detonate run?
RNA-Seq Detonate Assembly sequencing next-gen
6.0 years ago by BioBing ▴ 150
4
votes
5
replies
4.4k
views
Where to find the Trinity assembly statistics?
RNA-Seq Trinity denovo
updated 6.0 years ago by ★ 2.7k • written 6.0 years ago by ▴ 150
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