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0
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1.6k
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Comment: C: Software to analyze Diamond data
7.2 years ago by Ana ▴ 200
1
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7
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1.9k
views
finding function of genes from their coordinates
gene annotation
7.2 years ago by Ana ▴ 200
0
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1
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1.9k
views
Comment: C: finding candidate genes and their annotations
7.2 years ago by Ana ▴ 200
1
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1
reply
1.4k
views
LD between CNVs and exterior SNPs
SNP cnv ld
7.2 years ago by Ana ▴ 200
2
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1
reply
2.6k
views
how to adjust a Manhattan plot for bayes factor
manhattan plot bayes factor
updated 7.3 years ago by 20 • written 7.4 years ago by ▴ 200
0
votes
3
replies
2.6k
views
error with running distruct.py in fastSTRUCTURE
fastSTRUCTURE admixture proportions
updated 7.4 years ago by 20 • written 7.6 years ago by ▴ 200
1
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0
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2.6k
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Comment: C: how to adjust a Manhattan plot for bayes factor
7.4 years ago by Ana ▴ 200
1
vote
3
replies
4.7k
views
determining appropriate window size for identifying highly differentiated SNPs
window-size genome-scan
updated 7.5 years ago by 89k • written 7.5 years ago by ▴ 200
1
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1
reply
2.7k
views
Comment: C: convert population allele count data into population allele frequency
7.5 years ago by Ana ▴ 200
0
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1
reply
2.7k
views
Comment: C: convert population allele count data into population allele frequency
7.5 years ago by Ana ▴ 200
0
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1
reply
2.7k
views
Comment: C: convert population allele count data into population allele frequency
7.5 years ago by Ana ▴ 200
4
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7
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2.7k
views
convert population allele count data into population allele frequency
allele frequency alle count python
updated 7.5 years ago by 89k • written 7.5 years ago by ▴ 200
0
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0
replies
1.7k
views
Comment: C: conditional replacing rows with 9
7.5 years ago by Ana ▴ 200
0
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0
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1.7k
views
Comment: C: conditional replacing rows with 9
7.5 years ago by Ana ▴ 200
0
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2
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1.7k
views
Comment: C: conditional replacing rows with 9
7.5 years ago by Ana ▴ 200
1
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0
replies
1.6k
views
Comment: C: how to calculate the proportion of SNPs with DP more than 5
7.5 years ago by Ana ▴ 200
0
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1
reply
2.1k
views
Comment: C: how to extract DP for individuals from the same population and save them in a fi
7.5 years ago by Ana ▴ 200
0
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4
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2.1k
views
how to extract DP for individuals from the same population and save them in a file
vcf-file depth of coverage
updated 7.5 years ago by 165k • written 7.5 years ago by ▴ 200
4
votes
6
replies
1.7k
views
conditional replacing rows with 9
bash text-processing
updated 7.5 years ago by ★ 2.7k • written 7.5 years ago by ▴ 200
0
votes
1
reply
5.6k
views
Comment: C: 012 genotype matrix using vcf tools (converting rows to columns)
7.5 years ago by Ana ▴ 200
4
votes
8
replies
5.6k
views
012 genotype matrix using vcf tools (converting rows to columns)
genotype-matrix vcftools
updated 2.0 years ago by 45k • written 7.5 years ago by ▴ 200
0
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1
reply
5.6k
views
Comment: C: 012 genotype matrix using vcf tools (converting rows to columns)
7.5 years ago by Ana ▴ 200
0
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0
replies
15k
views
Comment: C: SnpMatrix from VCF file
7.5 years ago by Ana ▴ 200
0
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1
reply
5.6k
views
Comment: C: 012 genotype matrix using vcf tools (converting rows to columns)
7.5 years ago by Ana ▴ 200
1
vote
2
replies
2.5k
views
how to print a specific column condition in multiple files
Unix text-processing
updated 7.5 years ago by 89k • written 7.5 years ago by ▴ 200
0
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1
reply
2.6k
views
Comment: C: error with running distruct.py in fastSTRUCTURE
7.6 years ago by Ana ▴ 200
1
vote
1
reply
2.8k
views
smartpca error running
software error SNP smartpca eigensoft
7.6 years ago by Ana ▴ 200
4
votes
6
replies
4.5k
views
how to run STRUCTURE command n times for each K value?
STRUCTURE bash
updated 7.6 years ago by 12k • written 7.6 years ago by ▴ 200
0
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1
reply
5.3k
views
Comment: C: running a perl script multiple times; input and output files are required
7.7 years ago by Ana ▴ 200
2
votes
7
replies
5.3k
views
running a perl script multiple times; input and output files are required
perl parallelization
updated 7.7 years ago by 165k • written 7.7 years ago by ▴ 200
0
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0
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5.3k
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Comment: C: running a perl script multiple times; input and output files are required
7.7 years ago by Ana ▴ 200
1
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0
replies
1.4k
views
Comment: C: extract groups of SnPs and store them in separate files
7.7 years ago by Ana ▴ 200
5
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2
replies
1.4k
views
extract groups of SnPs and store them in separate files
SNP subsetting
7.7 years ago by Ana ▴ 200
0
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0
replies
2.0k
views
Comment: C: how can I keep only those SNP in file "a" which match to SNPs in file "b"?
7.7 years ago by Ana ▴ 200
5
votes
5
replies
2.0k
views
how can I keep only those SNP in file "a" which match to SNPs in file "b"?
row genotype file
updated 7.7 years ago by 47k • written 7.7 years ago by ▴ 200
0
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1
reply
3.7k
views
Comment: C: restructure rows and columns in perl or python (Interleaving columns by row pair
7.8 years ago by Ana ▴ 200
23
votes
19
replies
3.7k
views
restructure rows and columns in perl or python (Interleaving columns by row pairs)
perl rows columns dataframe python
updated 7.8 years ago by 47k • written 7.8 years ago by ▴ 200
3
votes
12
replies
3.7k
views
how to extract a random set of SNP from a SNP table
SNP random sample extraction
updated 7.8 years ago by 36k • written 7.9 years ago by ▴ 200
0
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1
reply
3.7k
views
Comment: C: how to extract a random set of SNP from a SNP table
7.8 years ago by Ana ▴ 200
0
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1
reply
3.7k
views
Comment: C: how to extract a random set of SNP from a SNP table
7.8 years ago by Ana ▴ 200
0
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1
reply
3.7k
views
Comment: C: how to extract a random set of SNP from a SNP table
7.9 years ago by Ana ▴ 200
0
votes
1
reply
3.7k
views
Comment: C: how to extract a random set of SNP from a SNP table
7.9 years ago by Ana ▴ 200
0
votes
2
replies
2.3k
views
extract DP of heterozygotes from vcf file
vcffile heterozygotes sample read depth
updated 7.9 years ago by 165k • written 7.9 years ago by ▴ 200
3
votes
4
replies
9.5k
views
how to filter vcf file based on sample DP? vcf tools does not work
vcf-filtering sample DP
8.0 years ago by Ana ▴ 200
0
votes
2
replies
4.2k
views
Comment: A: extract sample DP values from VCF
8.0 years ago by Ana ▴ 200
0
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0
replies
3.3k
views
Comment: C: calculating genotype quality from genotype likelihood
8.0 years ago by Ana ▴ 200
0
votes
2
replies
3.3k
views
calculating genotype quality from genotype likelihood
FreeBayes genotype likelihood genotype quality
updated 8.0 years ago by ▴ 70 • written 8.0 years ago by ▴ 200
0
votes
1
reply
2.0k
views
Comment: C: creating for loops in R for nGS data
8.1 years ago by Ana ▴ 200
2
votes
3
replies
2.0k
views
creating for loops in R for nGS data
R loops
updated 8.1 years ago by ★ 4.7k • written 8.1 years ago by ▴ 200
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