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comments
0
votes
0
replies
152
views
rMATS reports zero evenets?
splicing
RNA-Seq
rmats
26 days ago by
PK
▴ 130
0
votes
0
replies
139
views
How to calculate weighted transcript length for each gene?
salmon
tximport
rna-seq
updated 4 weeks ago by
Ram
43k • written 4 weeks ago by
PK
▴ 130
0
votes
0
replies
258
views
Comment:
Comment: Error from cgat gtf2gtf --method=genes-to-unique-chunks
8 weeks ago by
PK
▴ 130
2
votes
2
replies
258
views
Error from cgat gtf2gtf --method=genes-to-unique-chunks
RNA-Seq
GTF
cgat
8 weeks ago by
PK
▴ 130
0
votes
0
replies
213
views
Comment:
Comment: IntronicParts vs. intronsByTranscript
10 weeks ago by
PK
▴ 130
0
votes
0
replies
562
views
Comment:
Comment: Featurecounts has more reads than star assigned reads ?
3 months ago by
PK
▴ 130
4
votes
5
replies
562
views
Featurecounts has more reads than star assigned reads ?
featurecounts
STAR
RNA-seq
3 months ago by
PK
▴ 130
0
votes
0
replies
562
views
Comment:
Comment: Featurecounts has more reads than star assigned reads ?
3 months ago by
PK
▴ 130
2
votes
1
reply
386
views
How to normalize intron counts?
DESeq
limma
RNA-SEQ
updated 10 months ago by
Asaf
10k • written 10 months ago by
PK
▴ 130
0
votes
0
replies
1.2k
views
Comment:
Comment: Is it possible to use salmon alevin tool for total rna seq samples?
10 months ago by
PK
▴ 130
0
votes
1
reply
1.2k
views
Comment:
Comment: Is it possible to use salmon alevin tool for total rna seq samples?
10 months ago by
PK
▴ 130
0
votes
1
reply
1.2k
views
Comment:
Comment: Is it possible to use salmon alevin tool for total rna seq samples?
10 months ago by
PK
▴ 130
0
votes
1
reply
1.2k
views
Comment:
Comment: Is it possible to use salmon alevin tool for total rna seq samples?
10 months ago by
PK
▴ 130
1
vote
8
replies
1.2k
views
Is it possible to use salmon alevin tool for total rna seq samples?
salmon
alignment
10 months ago by
PK
▴ 130
1
vote
1
reply
417
views
weird behaviour on bedtools
bedtools
RNA-Seq
updated 11 months ago by
Ram
43k • written 11 months ago by
PK
▴ 130
1
vote
0
replies
480
views
How to calculate Exon-Intron junction perbase coverage?
RNA-Seq
bedtools
13 months ago by
PK
▴ 130
0
votes
0
replies
352
views
Reference book for clip seq analysis?
RNASEQ
clipseq
R
13 months ago by
PK
▴ 130
0
votes
0
replies
660
views
Comment:
Comment: Strand-specific in HT-Seq
15 months ago by
PK
▴ 130
0
votes
0
replies
348
views
How to normalize the counts when you are looking at 3'UTR?
bedtools
RNA-Seq
updated 10 months ago by
Ram
43k • written 15 months ago by
PK
▴ 130
0
votes
0
replies
710
views
Comment:
Comment: Metagene for first last and intermediate exons?
16 months ago by
PK
▴ 130
0
votes
2
replies
710
views
Metagene for first last and intermediate exons?
ggplot
Rna-seq
deeptools
r
updated 10 months ago by
Ram
43k • written 16 months ago by
PK
▴ 130
0
votes
1
reply
965
views
how to create a metagene plot for different features of genes?
metagene
RNA-Seq
deeptools
R
updated 16 months ago by
seidel
11k • written 16 months ago by
PK
▴ 130
0
votes
1
reply
616
views
Comment:
Comment: How to plot that the certain exons are affected in the genebody?
17 months ago by
PK
▴ 130
3
votes
3
replies
616
views
How to plot that the certain exons are affected in the genebody?
RNA-seq
updated 16 months ago by
Ram
43k • written 17 months ago by
PK
▴ 130
1
vote
1
reply
467
views
How to handle multiple overlap and choose closest one?
RNA-Seq
bedtools
updated 17 months ago by
Pierre Lindenbaum
161k • written 17 months ago by
PK
▴ 130
0
votes
0
replies
1.3k
views
Comment:
Comment: DEXSeq unable to find an inherited method for function ‘NSBS’ for signature ‘"C
17 months ago by
PK
▴ 130
0
votes
0
replies
1.7k
views
Comment:
Comment: Counting gene vs exons in featureCounts
17 months ago by
PK
▴ 130
0
votes
0
replies
2.7k
views
Comment:
Comment: How to extract intron counts from total RNA Sequencing?
17 months ago by
PK
▴ 130
0
votes
1
reply
2.7k
views
Comment:
Comment: How to extract intron counts from total RNA Sequencing?
17 months ago by
PK
▴ 130
0
votes
1
reply
2.7k
views
Comment:
Comment: How to extract intron counts from total RNA Sequencing?
17 months ago by
PK
▴ 130
0
votes
0
replies
2.7k
views
Comment:
Comment: How to extract intron counts from total RNA Sequencing?
17 months ago by
PK
▴ 130
0
votes
1
reply
2.7k
views
Comment:
Comment: How to extract intron counts from total RNA Sequencing?
17 months ago by
PK
▴ 130
0
votes
1
reply
2.7k
views
Comment:
Comment: How to extract intron counts from total RNA Sequencing?
17 months ago by
PK
▴ 130
5
votes
16
replies
2.7k
views
How to extract intron counts from total RNA Sequencing?
featurecounts
RNAseq
htseq
STAR
17 months ago by
PK
▴ 130
0
votes
1
reply
2.7k
views
Comment:
Comment: How to extract intron counts from total RNA Sequencing?
17 months ago by
PK
▴ 130
0
votes
0
replies
1.6k
views
Comment:
Comment: What is the advantage of mapping RNA-Seq against genome?
18 months ago by
PK
▴ 130
0
votes
1
reply
1.6k
views
Comment:
Comment: What is the advantage of mapping RNA-Seq against genome?
18 months ago by
PK
▴ 130
0
votes
1
reply
1.6k
views
Comment:
Comment: What is the advantage of mapping RNA-Seq against genome?
18 months ago by
PK
▴ 130
4
votes
7
replies
1.6k
views
What is the advantage of mapping RNA-Seq against genome?
RNA-SEQ
mapping
18 months ago by
PK
▴ 130
0
votes
0
replies
370
views
can i use repeat masker gff file to directly extract the counts from fastq files?
repeat
base
masker
rep
18 months ago by
PK
▴ 130
0
votes
0
replies
325
views
How to generate gene body coverage plot for tRNA?
clipseq
peak-calling
RNA-seq
samtools
updated 10 months ago by
Ram
43k • written 20 months ago by
PK
▴ 130
0
votes
0
replies
773
views
Comment:
Comment: What is the maximum size of fasta file i can use for repeatmasker?
21 months ago by
PK
▴ 130
0
votes
1
reply
773
views
Comment:
Comment: What is the maximum size of fasta file i can use for repeatmasker?
21 months ago by
PK
▴ 130
0
votes
4
replies
773
views
What is the maximum size of fasta file i can use for repeatmasker?
RNAseq
Repeatmasker
repititive
elements
21 months ago by
PK
▴ 130
0
votes
1
reply
1.4k
views
Comment:
Comment: RepeatMasker error
21 months ago by
PK
▴ 130
0
votes
1
reply
1.4k
views
Comment:
Comment: RepeatMasker error
21 months ago by
PK
▴ 130
0
votes
1
reply
1.4k
views
Comment:
Comment: RepeatMasker error
21 months ago by
PK
▴ 130
0
votes
1
reply
1.4k
views
Comment:
Comment: RepeatMasker error
21 months ago by
PK
▴ 130
1
vote
1
reply
1.4k
views
Comment:
Comment: RepeatMasker error
21 months ago by
PK
▴ 130
3
votes
11
replies
1.4k
views
RepeatMasker error
repeatmasking
transciptome
RNA-seq
updated 21 months ago by
mark.ziemann
★ 1.9k • written 21 months ago by
PK
▴ 130
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