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157
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rMATS reports zero evenets?
splicing RNA-Seq rmats
5 weeks ago by PK ▴ 130
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0
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147
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How to calculate weighted transcript length for each gene?
salmon tximport rna-seq
updated 6 weeks ago by 43k • written 6 weeks ago by ▴ 130
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0
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278
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Comment: Comment: Error from cgat gtf2gtf --method=genes-to-unique-chunks
9 weeks ago by PK ▴ 130
2
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2
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278
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Error from cgat gtf2gtf --method=genes-to-unique-chunks
RNA-Seq GTF cgat
9 weeks ago by PK ▴ 130
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229
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Comment: Comment: IntronicParts vs. intronsByTranscript
12 weeks ago by PK ▴ 130
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0
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586
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Comment: Comment: Featurecounts has more reads than star assigned reads ?
3 months ago by PK ▴ 130
4
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5
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586
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Featurecounts has more reads than star assigned reads ?
featurecounts STAR RNA-seq
3 months ago by PK ▴ 130
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0
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586
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Comment: Comment: Featurecounts has more reads than star assigned reads ?
3 months ago by PK ▴ 130
2
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1
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390
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How to normalize intron counts?
DESeq limma RNA-SEQ
updated 10 months ago by 10k • written 10 months ago by ▴ 130
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0
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1.2k
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Comment: Comment: Is it possible to use salmon alevin tool for total rna seq samples?
10 months ago by PK ▴ 130
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1
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1.2k
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Comment: Comment: Is it possible to use salmon alevin tool for total rna seq samples?
10 months ago by PK ▴ 130
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1
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1.2k
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Comment: Comment: Is it possible to use salmon alevin tool for total rna seq samples?
10 months ago by PK ▴ 130
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1
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1.2k
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Comment: Comment: Is it possible to use salmon alevin tool for total rna seq samples?
10 months ago by PK ▴ 130
1
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8
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1.2k
views
Is it possible to use salmon alevin tool for total rna seq samples?
salmon alignment
10 months ago by PK ▴ 130
1
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1
reply
424
views
weird behaviour on bedtools
bedtools RNA-Seq
updated 11 months ago by 43k • written 11 months ago by ▴ 130
1
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0
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483
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How to calculate Exon-Intron junction perbase coverage?
RNA-Seq bedtools
13 months ago by PK ▴ 130
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0
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358
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Reference book for clip seq analysis?
RNASEQ clipseq R
14 months ago by PK ▴ 130
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0
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667
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Comment: Comment: Strand-specific in HT-Seq
15 months ago by PK ▴ 130
0
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0
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351
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How to normalize the counts when you are looking at 3'UTR?
bedtools RNA-Seq
updated 10 months ago by 43k • written 15 months ago by ▴ 130
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0
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720
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Comment: Comment: Metagene for first last and intermediate exons?
16 months ago by PK ▴ 130
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2
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720
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Metagene for first last and intermediate exons?
ggplot Rna-seq deeptools r
updated 10 months ago by 43k • written 16 months ago by ▴ 130
0
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1
reply
973
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how to create a metagene plot for different features of genes?
metagene RNA-Seq deeptools R
updated 16 months ago by 11k • written 16 months ago by ▴ 130
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1
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624
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Comment: Comment: How to plot that the certain exons are affected in the genebody?
17 months ago by PK ▴ 130
3
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3
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624
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How to plot that the certain exons are affected in the genebody?
RNA-seq
updated 17 months ago by 43k • written 17 months ago by ▴ 130
1
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1
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474
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How to handle multiple overlap and choose closest one?
RNA-Seq bedtools
updated 17 months ago by 161k • written 17 months ago by ▴ 130
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0
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1.3k
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Comment: Comment: DEXSeq unable to find an inherited method for function ‘NSBS’ for signature ‘"C
17 months ago by PK ▴ 130
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0
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1.7k
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Comment: Comment: Counting gene vs exons in featureCounts
17 months ago by PK ▴ 130
0
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0
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2.7k
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Comment: Comment: How to extract intron counts from total RNA Sequencing?
17 months ago by PK ▴ 130
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1
reply
2.7k
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Comment: Comment: How to extract intron counts from total RNA Sequencing?
17 months ago by PK ▴ 130
0
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1
reply
2.7k
views
Comment: Comment: How to extract intron counts from total RNA Sequencing?
17 months ago by PK ▴ 130
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0
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2.7k
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Comment: Comment: How to extract intron counts from total RNA Sequencing?
17 months ago by PK ▴ 130
0
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1
reply
2.7k
views
Comment: Comment: How to extract intron counts from total RNA Sequencing?
17 months ago by PK ▴ 130
0
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1
reply
2.7k
views
Comment: Comment: How to extract intron counts from total RNA Sequencing?
18 months ago by PK ▴ 130
5
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16
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2.7k
views
How to extract intron counts from total RNA Sequencing?
featurecounts RNAseq htseq STAR
17 months ago by PK ▴ 130
0
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1
reply
2.7k
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Comment: Comment: How to extract intron counts from total RNA Sequencing?
18 months ago by PK ▴ 130
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0
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1.6k
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Comment: Comment: What is the advantage of mapping RNA-Seq against genome?
18 months ago by PK ▴ 130
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1
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1.6k
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Comment: Comment: What is the advantage of mapping RNA-Seq against genome?
18 months ago by PK ▴ 130
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1
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1.6k
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Comment: Comment: What is the advantage of mapping RNA-Seq against genome?
18 months ago by PK ▴ 130
4
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7
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1.6k
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What is the advantage of mapping RNA-Seq against genome?
RNA-SEQ mapping
18 months ago by PK ▴ 130
0
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0
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372
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can i use repeat masker gff file to directly extract the counts from fastq files?
repeat base masker rep
19 months ago by PK ▴ 130
0
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0
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328
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How to generate gene body coverage plot for tRNA?
clipseq peak-calling RNA-seq samtools
updated 10 months ago by 43k • written 21 months ago by ▴ 130
0
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0
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784
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Comment: Comment: What is the maximum size of fasta file i can use for repeatmasker?
22 months ago by PK ▴ 130
0
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1
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784
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Comment: Comment: What is the maximum size of fasta file i can use for repeatmasker?
22 months ago by PK ▴ 130
0
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4
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784
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What is the maximum size of fasta file i can use for repeatmasker?
RNAseq Repeatmasker repititive elements
22 months ago by PK ▴ 130
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1
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1.5k
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Comment: Comment: RepeatMasker error
22 months ago by PK ▴ 130
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1
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1.5k
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Comment: Comment: RepeatMasker error
22 months ago by PK ▴ 130
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1
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1.5k
views
Comment: Comment: RepeatMasker error
22 months ago by PK ▴ 130
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1
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1.5k
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Comment: Comment: RepeatMasker error
22 months ago by PK ▴ 130
1
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1
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1.5k
views
Comment: Comment: RepeatMasker error
22 months ago by PK ▴ 130
3
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11
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1.5k
views
RepeatMasker error
repeatmasking transciptome RNA-seq
updated 22 months ago by ★ 1.9k • written 22 months ago by ▴ 130
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