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1
vote
5
replies
2.6k
views
Small dispersion values in differential expression analysis
RNA-Seq ChIP-Seq sequencing
updated 5.1 years ago by 89k • written 7.3 years ago by ▴ 110
0
votes
2
replies
1.5k
views
DeSeq-1 and edgeR
RNA-Seq exact test
updated 7.3 years ago by 89k • written 7.3 years ago by ▴ 110
10
votes
5
replies
9.2k
views
Get Introns from a gft annotation file
RNA-Seq Intron
updated 7.7 years ago by ▴ 60 • written 8.5 years ago by ▴ 110
0
votes
2
replies
2.0k
views
ncRNA, RNAseq, totalRNA, long ncRNA
RNA-Seq
updated 8.1 years ago by 20 • written 8.2 years ago by ▴ 110
0
votes
1
reply
20k
views
Answer: A: Help understanding MACS2 --extsize and --shift
8.1 years ago by xd_d ▴ 110
2
votes
1
reply
4.2k
views
MACS2 , pvalue
ChIP-Seq sequence
updated 8.1 years ago by ★ 2.2k • written 8.1 years ago by ▴ 110
1
vote
6
replies
2.6k
views
RNAseq, Noise , Signal
RNA-Seq Noise
updated 8.2 years ago by 105k • written 8.2 years ago by ▴ 110
0
votes
2
replies
2.6k
views
Comment: C: RNAseq, Noise , Signal
8.2 years ago by xd_d ▴ 110
0
votes
0
replies
2.1k
views
Comment: C: RNAseq, poly(A) selection
8.2 years ago by xd_d ▴ 110
1
vote
3
replies
2.1k
views
RNAseq, poly(A) selection
RNA-Seq next-gen sequencing
updated 8.2 years ago by ▴ 520 • written 8.2 years ago by ▴ 110
0
votes
0
replies
1.8k
views
Aberrant Splicing, alternative splicing
RNA-Seq cancer
8.2 years ago by xd_d ▴ 110
0
votes
2
replies
2.9k
views
DEXseq alternative splicing detection
RNA-Seq
updated 8.2 years ago by ★ 4.2k • written 8.3 years ago by ▴ 110
0
votes
0
replies
3.2k
views
Comment: C: Alternative Splicing detection
8.3 years ago by xd_d ▴ 110
1
vote
4
replies
3.2k
views
Alternative Splicing detection
RNA-Seq sequencing
updated 8.3 years ago by ★ 4.2k • written 8.3 years ago by ▴ 110
0
votes
1
reply
69k
views
Comment: C: Recommended Tools For Alternative Splicing Detection From Rna-Seq Data
8.3 years ago by xd_d ▴ 110
2
votes
1
reply
7.1k
views
Comment: C: samtools view region
8.3 years ago by xd_d ▴ 110
6
votes
12
replies
7.1k
views
samtools view region
RNA-Seq samtools paired-end
updated 8.3 years ago by 15k • written 8.3 years ago by ▴ 110
0
votes
1
reply
3.9k
views
Comment: A: MISO: Extraction of splicing events from user specified gene annotation (gtf or
8.3 years ago by xd_d ▴ 110
0
votes
1
reply
2.6k
views
Comment: C: read depth of a feature (e.g gene or exon)
8.4 years ago by xd_d ▴ 110
0
votes
1
reply
2.6k
views
Comment: C: read depth of a feature (e.g gene or exon)
8.4 years ago by xd_d ▴ 110
0
votes
1
reply
2.6k
views
Comment: C: read depth of a feature (e.g gene or exon)
8.4 years ago by xd_d ▴ 110
5
votes
11
replies
2.6k
views
read depth of a feature (e.g gene or exon)
rna-seq coverage
updated 2.3 years ago by 45k • written 8.4 years ago by ▴ 110
0
votes
1
reply
2.6k
views
Comment: A: read depth of a feature (e.g gene or exon)
8.4 years ago by xd_d ▴ 110
0
votes
0
replies
13k
views
Comment: C: Picard vs samtools rmdup
8.4 years ago by xd_d ▴ 110
6
votes
13
replies
13k
views
Picard vs samtools rmdup
RNA-Seq Samtools Picard
updated 8.4 years ago by 13k • written 8.4 years ago by ▴ 110
2
votes
5
replies
5.3k
views
Picard Markduplicates Problem
Picard Duplicates
updated 8.4 years ago by 154k • written 8.4 years ago by ▴ 110
0
votes
1
reply
5.3k
views
Comment: C: Picard Markduplicates Problem
8.4 years ago by xd_d ▴ 110
0
votes
0
replies
5.3k
views
Comment: C: Picard Markduplicates Problem
8.4 years ago by xd_d ▴ 110
0
votes
0
replies
13k
views
Answer: A: Picard vs samtools rmdup
8.4 years ago by xd_d ▴ 110
0
votes
0
replies
13k
views
Comment: C: Picard vs samtools rmdup
8.4 years ago by xd_d ▴ 110
0
votes
0
replies
13k
views
Comment: C: Picard vs samtools rmdup
8.4 years ago by xd_d ▴ 110
0
votes
0
replies
13k
views
Comment: C: Picard vs samtools rmdup
8.4 years ago by xd_d ▴ 110
0
votes
1
reply
13k
views
Comment: C: Picard vs samtools rmdup
8.4 years ago by xd_d ▴ 110
0
votes
2
replies
13k
views
Comment: C: Picard vs samtools rmdup
8.4 years ago by xd_d ▴ 110
0
votes
0
replies
2.0k
views
MACS2 extsize parameter problem
ChIP-Seq
8.4 years ago by xd_d ▴ 110
0
votes
0
replies
9.2k
views
Answer: A: Get Introns from a gft annotation file
8.5 years ago by xd_d ▴ 110
0
votes
1
reply
12k
views
Comment: C: Resources for converting between UCSC <-> Gencode <-> Ensembl chromosome names
8.5 years ago by xd_d ▴ 110
1
vote
3
replies
2.4k
views
Get introns in bam format from alignment reads result
RNA-Seq Intron
8.5 years ago by xd_d ▴ 110
1
vote
0
replies
4.9k
views
Comment: C: Trimmomatic -> STAR
8.5 years ago by xd_d ▴ 110
0
votes
1
reply
4.9k
views
Comment: C: Trimmomatic -> STAR
8.5 years ago by xd_d ▴ 110
5
votes
7
replies
4.9k
views
Trimmomatic -> STAR
RNA-Seq STAR Trimmomatic
8.5 years ago by xd_d ▴ 110
4
votes
3
replies
5.1k
views
NGS overlapping reads
RNA-Seq alignment NGS Read Read-depth
updated 8.6 years ago by ★ 3.0k • written 8.6 years ago by ▴ 110
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