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11k
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Comment: C: Using BWA Index and i get 5 output files, but BWA-mem asks for just 1
6.0 years ago by DNAngel ▴ 260
0
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0
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17k
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Comment: C: Reads Per Contig From Sam File?
6.0 years ago by DNAngel ▴ 260
0
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0
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980
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How to obtain protein-coding sequences from assembled genome/exome dataset?
PAML bwa
6.0 years ago by DNAngel ▴ 260
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0
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5.7k
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Comment: C: Too Many Genes Under Positive Selection
6.0 years ago by DNAngel ▴ 260
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0
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5.7k
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Comment: C: Too Many Genes Under Positive Selection
6.0 years ago by DNAngel ▴ 260
0
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0
replies
836
views
How to test evolutionary rates for each species in a gene alignment?
evolutionary rate R
6.1 years ago by DNAngel ▴ 260
0
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0
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1.2k
views
R package to calculate ancestral state characters using maximum parsimony?
R maximum parsimony ancestral states
6.3 years ago by DNAngel ▴ 260
0
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2
replies
6.9k
views
Is there a tool to calculate sequence similarity of sequences in a MSA?
alignment DNA
6.4 years ago by DNAngel ▴ 260
0
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0
replies
1.2k
views
Theory question on dN/dS values for phylogeny
dNdS paml codeml
6.4 years ago by DNAngel ▴ 260
0
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1
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3.7k
views
Comment: C: Help with understanding PAML M0 output
6.4 years ago by DNAngel ▴ 260
0
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1
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3.7k
views
Comment: C: Help with understanding PAML M0 output
6.4 years ago by DNAngel ▴ 260
0
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1
reply
3.7k
views
Comment: C: Help with understanding PAML M0 output
6.4 years ago by DNAngel ▴ 260
1
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7
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3.7k
views
Help with understanding PAML M0 output
PAML M0
updated 6.4 years ago by ★ 2.2k • written 6.4 years ago by ▴ 260
5
votes
4
replies
3.3k
views
Does Whole Exome Sequencing Include Mitochondrial Genome??
mitogenome exome whole exome sequencing
updated 6.4 years ago by 23k • written 6.4 years ago by ▴ 260
0
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1
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1.6k
views
Comment: C: How to set up a reference file for BWA so that highly variable sites between con
6.6 years ago by DNAngel ▴ 260
0
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3
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1.6k
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How to set up a reference file for BWA so that highly variable sites between conserved regions are detected?
bwa samtools
6.6 years ago by DNAngel ▴ 260
0
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0
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2.2k
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Comment: C: How do you run codeml for two genes in one file but with 1 species tree?
6.6 years ago by DNAngel ▴ 260
0
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4
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2.2k
views
How do you run codeml for two genes in one file but with 1 species tree?
PAML codeml
updated 6.6 years ago by ★ 1.8k • written 6.6 years ago by ▴ 260
0
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0
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2.2k
views
Comment: C: How do you run codeml for two genes in one file but with 1 species tree?
6.6 years ago by DNAngel ▴ 260
0
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0
replies
6.2k
views
Comment: C: How to distinguish if a gene is a paralogue or an isoform?
6.6 years ago by DNAngel ▴ 260
8
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3
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6.2k
views
How to distinguish if a gene is a paralogue or an isoform?
paralogue isoform gene
updated 6.6 years ago by ★ 1.9k • written 6.6 years ago by ▴ 260
0
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1
reply
3.2k
views
Comment: C: Can BWA restart a calculation after a break?
6.7 years ago by DNAngel ▴ 260
0
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1
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3.2k
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Comment: C: Can BWA restart a calculation after a break?
6.7 years ago by DNAngel ▴ 260
5
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9
replies
3.2k
views
Can BWA restart a calculation after a break?
bwa samtools
updated 6.7 years ago by 15k • written 6.7 years ago by ▴ 260
2
votes
1
reply
1.1k
views
Do the lowercase bases seen in BAM files need to be reverse complemented in consensus?
BAM
updated 6.7 years ago by 105k • written 6.7 years ago by ▴ 260
0
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1
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10k
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Comment: C: How to count the total aligned bases in BAM?
6.7 years ago by DNAngel ▴ 260
0
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0
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3.6k
views
Comment: A: How to create consensus from bam file without IUPAC code?
6.7 years ago by DNAngel ▴ 260
13
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16
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9.4k
views
6 follow
Confused about how to generate a consensus sequence after bwa
bwa samtools mpileup
6.7 years ago by DNAngel ▴ 260
1
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0
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9.4k
views
Comment: C: Confused about how to generate a consensus sequence after bwa
6.8 years ago by DNAngel ▴ 260
0
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0
replies
4.7k
views
Comment: C: Ngs Question ~ Consensus
6.8 years ago by DNAngel ▴ 260
0
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1
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9.4k
views
Comment: C: Confused about how to generate a consensus sequence after bwa
6.8 years ago by DNAngel ▴ 260
0
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1
reply
9.4k
views
Comment: A: Confused about how to generate a consensus sequence after bwa
6.8 years ago by DNAngel ▴ 260
0
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0
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9.4k
views
Comment: C: Confused about how to generate a consensus sequence after bwa
6.8 years ago by DNAngel ▴ 260
1
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2
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4.6k
views
Answer: A: How to save trimmomatic terminal summary to an output file?
updated 6.8 years ago by 45k • written 6.8 years ago by ▴ 260
7
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5
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4.6k
views
How to save trimmomatic terminal summary to an output file?
trimmomatic
6.8 years ago by DNAngel ▴ 260
0
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1
reply
2.0k
views
How do you make a tree file in R using a fasta MSA?
R
6.9 years ago by DNAngel ▴ 260
0
votes
2
replies
1.7k
views
How to keep a log of columns removed from edited MSA?
MEGA MSA Python
updated 7.6 years ago by 20 • written 7.7 years ago by ▴ 260
0
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0
replies
2.8k
views
Comment: C: makeblastdb.exe giving me an unclear error message when creating a database
7.9 years ago by DNAngel ▴ 260
0
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2
replies
2.8k
views
Comment: C: makeblastdb.exe giving me an unclear error message when creating a database
7.9 years ago by DNAngel ▴ 260
0
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0
replies
2.8k
views
Comment: C: makeblastdb.exe giving me an unclear error message when creating a database
7.9 years ago by DNAngel ▴ 260
1
vote
7
replies
2.8k
views
makeblastdb.exe giving me an unclear error message when creating a database
blast
updated 7.9 years ago by 166k • written 7.9 years ago by ▴ 260
2
votes
1
reply
2.8k
views
How much does cleandata in PAML analysis remove?
PAML codeml cleandata
updated 8.1 years ago by 35k • written 8.1 years ago by ▴ 260
0
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0
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3.8k
views
Comment: C: Is there a way to do clustalo profile-profile alignment without adding gaps to f
8.1 years ago by DNAngel ▴ 260
0
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11
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3.8k
views
Is there a way to do clustalo profile-profile alignment without adding gaps to first profile?
profile-profile alignment clustalo
8.1 years ago by DNAngel ▴ 260
0
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0
replies
3.8k
views
Comment: C: Is there a way to do clustalo profile-profile alignment without adding gaps to f
8.1 years ago by DNAngel ▴ 260
0
votes
2
replies
3.8k
views
Comment: C: Is there a way to do clustalo profile-profile alignment without adding gaps to f
8.1 years ago by DNAngel ▴ 260
0
votes
1
reply
3.8k
views
Comment: C: Is there a way to do clustalo profile-profile alignment without adding gaps to f
8.1 years ago by DNAngel ▴ 260
0
votes
1
reply
3.8k
views
Comment: C: Is there a way to do clustalo profile-profile alignment without adding gaps to f
8.1 years ago by DNAngel ▴ 260
0
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0
replies
3.7k
views
Comment: C: aligning two MSA
8.1 years ago by DNAngel ▴ 260
0
votes
0
replies
3.8k
views
Comment: C: Is there a way to do clustalo profile-profile alignment without adding gaps to f
8.1 years ago by DNAngel ▴ 260
203 results • Page 4 of 5
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