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42
votes
13
replies
33k
views
13 follow
Gene Set Enrichment Analysis after DESeq2
RNA-Seq DESeq2 geneontology GSEA
updated 9 months ago by 45k • written 8.0 years ago by ▴ 310
9
votes
10
replies
9.3k
views
7 follow
Featurecounts to DESEq2 - How to merge biological replicates?
DESeq2 RNA-Seq featurecounts
updated 3.1 years ago by ★ 4.5k • written 8.5 years ago by ▴ 310
8
votes
6
replies
10k
views
6 follow
Generating heatmaps of pre-selected candidate genes after deseq2
RNA-Seq DESEq2 heatmap
updated 4.0 years ago by • 0 • written 8.0 years ago by ▴ 310
3
votes
5
replies
7.6k
views
Validation of RNASeq Data - How to validate RNASeq DEGs using qPCR
RNA-Seq DESeq2
updated 5.0 years ago by ★ 5.2k • written 8.2 years ago by ▴ 310
0
votes
2
replies
1.8k
views
Classifying DEGs based on the tissue where it is expressed
gene ontology deseq2 RNA-Seq
updated 6.5 years ago by 20 • written 8.1 years ago by ▴ 310
12
votes
2
replies
9.0k
views
GO analysis using topGO Arabidopsis
RNA-Seq geneontology GOenrichment topGO
updated 6.6 years ago by 89k • written 8.5 years ago by ▴ 310
11
votes
9
replies
11k
views
7 follow
Getting average fragment length for single end reads
RNA-Seq kallisto differential expresion
updated 7.5 years ago by ▴ 30 • written 8.5 years ago by ▴ 310
2
votes
5
replies
3.9k
views
Time course experiment in RNASeq
RNA-Seq
updated 8.0 years ago by 7.6k • written 8.0 years ago by ▴ 310
0
votes
0
replies
1.3k
views
Plotting Results in EBSeq-HMM
RNA-Seq EBSeq-HMM
8.0 years ago by Sreeraj Thamban ▴ 310
1
vote
1
reply
1.6k
views
Kallisto counts to Bayseq
RNA-Seq
updated 8.0 years ago by 89k • written 8.0 years ago by ▴ 310
1
vote
1
reply
1.4k
views
Bayesian Estimation of Temporal Regulation-RNASeq
RNA-Seq
updated 8.0 years ago by 6.7k • written 8.0 years ago by ▴ 310
0
votes
1
reply
3.8k
views
Comment: C: Fetching NCBI gene symbols from NCBI protein ids or GI identifiers
8.0 years ago by Sreeraj Thamban ▴ 310
0
votes
1
reply
3.9k
views
Comment: C: Time course experiment in RNASeq
8.0 years ago by Sreeraj Thamban ▴ 310
4
votes
8
replies
3.7k
views
6 follow
Best tools for Visualing RNASeq data
RNA-Seq DESEQ2
updated 8.0 years ago by ▴ 990 • written 8.0 years ago by ▴ 310
0
votes
3
replies
3.7k
views
Comment: C: Best tools for Visualing RNASeq data
8.0 years ago by Sreeraj Thamban ▴ 310
1
vote
1
reply
2.0k
views
Answer: A: How I can produce graphs like this
8.0 years ago by Sreeraj Thamban ▴ 310
0
votes
1
reply
5.2k
views
Comment: C: Paired end vs Single end Differential gene expression analysis
8.0 years ago by Sreeraj Thamban ▴ 310
2
votes
1
reply
5.4k
views
Answer: A: Python for bioinformatics
8.0 years ago by Sreeraj Thamban ▴ 310
0
votes
1
reply
5.2k
views
Comment: C: Paired end vs Single end Differential gene expression analysis
8.0 years ago by Sreeraj Thamban ▴ 310
0
votes
2
replies
5.2k
views
Comment: C: Paired end vs Single end Differential gene expression analysis
8.0 years ago by Sreeraj Thamban ▴ 310
6
votes
9
replies
5.2k
views
Paired end vs Single end Differential gene expression analysis
RNA-Seq DESEq2
updated 8.0 years ago by 5.2k • written 8.0 years ago by ▴ 310
1
vote
0
replies
30k
views
Answer: A: Can anyone suggest a good tutorial to learn RNA-seq analysis?
8.0 years ago by Sreeraj Thamban ▴ 310
0
votes
1
reply
1.6k
views
Comment: C: Getting the number of Genes expressed in a sample
8.1 years ago by Sreeraj Thamban ▴ 310
2
votes
4
replies
1.6k
views
Getting the number of Genes expressed in a sample
RNA-Seq
8.1 years ago by Sreeraj Thamban ▴ 310
0
votes
1
reply
15k
views
Comment: C: Dealing with multimapping reads in featureCounts
8.1 years ago by Sreeraj Thamban ▴ 310
7
votes
4
replies
15k
views
Dealing with multimapping reads in featureCounts
RNA-Seq featureCounts TopHat
updated 2.9 years ago by • 0 • written 8.1 years ago by ▴ 310
0
votes
1
reply
5.3k
views
Comment: C: Selecting Deferentially Expressed Genes in RNASeq data analysis - DESEq2 and Cuf
8.1 years ago by Sreeraj Thamban ▴ 310
0
votes
0
replies
5.3k
views
Comment: C: Selecting Deferentially Expressed Genes in RNASeq data analysis - DESEq2 and Cuf
8.1 years ago by Sreeraj Thamban ▴ 310
9
votes
12
replies
5.3k
views
Selecting Deferentially Expressed Genes in RNASeq data analysis - DESEq2 and Cuffdiff
RNA-Seq DESeq2
updated 8.2 years ago by 89k • written 8.2 years ago by ▴ 310
0
votes
1
reply
7.6k
views
Comment: C: Validation of RNASeq Data - How to validate RNASeq DEGs using qPCR
8.2 years ago by Sreeraj Thamban ▴ 310
0
votes
0
replies
1.4k
views
Retrieving Annotation data from runTest() created object
rna-seq topGO Deseq2 gene ontology
8.4 years ago by Sreeraj Thamban ▴ 310
0
votes
0
replies
2.9k
views
Answer: A: Gene set enrichment analysis cuffdiff output
8.4 years ago by Sreeraj Thamban ▴ 310
1
vote
1
reply
11k
views
Comment: C: Getting average fragment length for single end reads
8.5 years ago by Sreeraj Thamban ▴ 310
0
votes
0
replies
11k
views
Comment: C: Getting average fragment length for single end reads
8.5 years ago by Sreeraj Thamban ▴ 310
3
votes
4
replies
5.9k
views
Retrieving the gene list related to all GO ID
topgo gene ontology RNA-Seq R
updated 8.5 years ago by ★ 1.1k • written 8.5 years ago by ▴ 310
0
votes
0
replies
5.9k
views
Comment: C: Retrieving the gene list related to all GO ID
8.5 years ago by Sreeraj Thamban ▴ 310
1
vote
1
reply
5.0k
views
Comment: C: Deseq2 differential result
8.5 years ago by Sreeraj Thamban ▴ 310
1
vote
1
reply
5.0k
views
Answer: A: Deseq2 differential result
8.5 years ago by Sreeraj Thamban ▴ 310
0
votes
1
reply
9.3k
views
Comment: C: Featurecounts to DESEq2 - How to merge biological replicates?
8.5 years ago by Sreeraj Thamban ▴ 310
0
votes
1
reply
9.3k
views
Comment: C: Featurecounts to DESEq2 - How to merge biological replicates?
8.5 years ago by Sreeraj Thamban ▴ 310
1
vote
0
replies
4.2k
views
Answer: A: Help for finding the right FASTA file for kallisto
8.5 years ago by Sreeraj Thamban ▴ 310
1
vote
1
reply
4.4k
views
Using Plant GO Slim in topGO
topGO Gene ontology plant GO slim arabidopsis
8.5 years ago by Sreeraj Thamban ▴ 310
2
votes
0
replies
9.0k
views
Comment: C: GO analysis using topGO Arabidopsis
8.5 years ago by Sreeraj Thamban ▴ 310
43 results • Page 1 of 1
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