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1
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7
replies
4.8k
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GMAP error - Problem Sequence: TRINITY_DN422143_c0_g1_i1 (301 bp)
alignment
updated 6.4 years ago by • 0 • written 7.6 years ago by ▴ 30
0
votes
3
replies
2.6k
views
Annotate SNPs called from Trinity transcriptome assembly using annotations from Trinotate pipeline
RNA-Seq Assembly blast
updated 6.4 years ago by • 0 • written 7.7 years ago by ▴ 30
1
vote
6
replies
3.2k
views
ABBA-BABA D statistics to pattern introgressed loci: applicable to RNA-seq data?
RNA-Seq SNP
updated 7.1 years ago by ▴ 700 • written 7.1 years ago by ▴ 30
0
votes
1
reply
1.7k
views
kissDE error during 'diffExpressedVariants' step: "Error in data.frame..."
kissDE kissplice KisSplice R SNP
7.4 years ago by TrentGenomics ▴ 30
1
vote
2
replies
1.9k
views
SNPs summaries/statistics from output of KisSplice/KisSplice2RefTranscriptome
kissplice snp RNA-Seq
updated 3.7 years ago by • 0 • written 7.5 years ago by ▴ 30
0
votes
1
reply
1.4k
views
KisSplice2RefTranscriptome runtime length
kissplice kissplice2reftranscriptome snp RNA-Seq
7.5 years ago by TrentGenomics ▴ 30
1
vote
9
replies
4.9k
views
Very high alignment rate with bowtie2
rna-seq alignment
7.6 years ago by TrentGenomics ▴ 30
0
votes
1
reply
1.4k
views
Predict the effect of SNPs in a VCF file generated using a Trinity assembly
snp
updated 7.6 years ago by 102k • written 7.6 years ago by ▴ 30
1
vote
1
reply
1.5k
views
Discrepancy between number of SNP calls using samtools/bcftools when --skip-indels flag used
SNP software error
7.7 years ago by TrentGenomics ▴ 30
0
votes
6
replies
2.1k
views
Convert chromosome headings in VCF file from Trinity format to chr:pos format
snp
updated 7.8 years ago by 166k • written 7.8 years ago by ▴ 30
0
votes
11
replies
2.8k
views
How to extract SNPs between samples and not between samples and reference
SNP RNA-Seq
7.8 years ago by TrentGenomics ▴ 30
2
votes
4
replies
1.8k
views
Very strange .vcf output after running samtools and bcftools variant calling pipeline!
RNA-Seq SNP
updated 7.8 years ago by 47k • written 7.8 years ago by ▴ 30
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