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7
replies
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GMAP error - Problem Sequence: TRINITY_DN422143_c0_g1_i1 (301 bp)
alignment
updated 5.8 years ago by • 0 • written 7.0 years ago by ▴ 30
0
votes
3
replies
2.5k
views
Annotate SNPs called from Trinity transcriptome assembly using annotations from Trinotate pipeline
RNA-Seq Assembly blast
updated 5.9 years ago by • 0 • written 7.1 years ago by ▴ 30
0
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1
reply
2.9k
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Comment: C: ABBA-BABA D statistics to pattern introgressed loci: applicable to RNA-seq data?
6.6 years ago by TrentGenomics ▴ 30
0
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1
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2.9k
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Comment: C: ABBA-BABA D statistics to pattern introgressed loci: applicable to RNA-seq data?
6.6 years ago by TrentGenomics ▴ 30
1
vote
6
replies
2.9k
views
ABBA-BABA D statistics to pattern introgressed loci: applicable to RNA-seq data?
RNA-Seq SNP
updated 6.6 years ago by ▴ 700 • written 6.6 years ago by ▴ 30
0
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1
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3.2k
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Comment: C: Calling de novo SNPs between two species with KisSplice
6.6 years ago by TrentGenomics ▴ 30
0
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0
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3.2k
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Answer: A: Calling de novo SNPs between two species with KisSplice
6.9 years ago by TrentGenomics ▴ 30
0
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0
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3.2k
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Comment: C: Calling de novo SNPs between two species with KisSplice
6.9 years ago by TrentGenomics ▴ 30
0
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0
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3.2k
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Answer: A: Calling de novo SNPs between two species with KisSplice
6.9 years ago by TrentGenomics ▴ 30
0
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0
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3.2k
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Answer: A: Calling de novo SNPs between two species with KisSplice
6.9 years ago by TrentGenomics ▴ 30
0
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1
reply
1.6k
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kissDE error during 'diffExpressedVariants' step: "Error in data.frame..."
kissDE kissplice KisSplice R SNP
6.9 years ago by TrentGenomics ▴ 30
1
vote
2
replies
1.7k
views
SNPs summaries/statistics from output of KisSplice/KisSplice2RefTranscriptome
kissplice snp RNA-Seq
updated 3.2 years ago by • 0 • written 7.0 years ago by ▴ 30
0
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0
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1.7k
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Answer: A: SNPs summaries/statistics from output of KisSplice/KisSplice2RefTranscriptome
7.0 years ago by TrentGenomics ▴ 30
0
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1
reply
1.3k
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KisSplice2RefTranscriptome runtime length
kissplice kissplice2reftranscriptome snp RNA-Seq
7.0 years ago by TrentGenomics ▴ 30
0
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0
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1.3k
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Answer: A: KisSplice2RefTranscriptome runtime length
7.0 years ago by TrentGenomics ▴ 30
0
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0
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3.5k
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Comment: C: CrossMap liftover failed
7.0 years ago by TrentGenomics ▴ 30
0
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0
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4.5k
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Comment: C: GMAP error - Problem Sequence: TRINITY_DN422143_c0_g1_i1 (301 bp)
7.0 years ago by TrentGenomics ▴ 30
0
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0
replies
4.4k
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Comment: C: Very high alignment rate with bowtie2
7.1 years ago by TrentGenomics ▴ 30
1
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0
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4.4k
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Answer: A: Very high alignment rate with bowtie2
7.1 years ago by TrentGenomics ▴ 30
1
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9
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4.4k
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Very high alignment rate with bowtie2
rna-seq alignment
7.1 years ago by TrentGenomics ▴ 30
0
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1
reply
4.4k
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Comment: C: Very high alignment rate with bowtie2
7.1 years ago by TrentGenomics ▴ 30
0
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1
reply
4.4k
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Comment: C: Very high alignment rate with bowtie2
7.1 years ago by TrentGenomics ▴ 30
0
votes
1
reply
1.3k
views
Predict the effect of SNPs in a VCF file generated using a Trinity assembly
snp
updated 7.1 years ago by 101k • written 7.1 years ago by ▴ 30
0
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0
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9.5k
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Comment: Comment: removing part of the fasta header from multifasta file
updated 2.9 years ago by 44k • written 7.2 years ago by ▴ 30
0
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1
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9.2k
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Comment: C: Substituting Snps On Reference Genome Assemblies
7.2 years ago by TrentGenomics ▴ 30
1
vote
1
reply
1.5k
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Discrepancy between number of SNP calls using samtools/bcftools when --skip-indels flag used
SNP software error
7.2 years ago by TrentGenomics ▴ 30
0
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0
replies
1.9k
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Comment: C: Convert chromosome headings in VCF file from Trinity format to chr:pos format
7.2 years ago by TrentGenomics ▴ 30
0
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0
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1.9k
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Comment: C: Convert chromosome headings in VCF file from Trinity format to chr:pos format
7.2 years ago by TrentGenomics ▴ 30
0
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0
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1.9k
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Comment: C: Convert chromosome headings in VCF file from Trinity format to chr:pos format
7.2 years ago by TrentGenomics ▴ 30
0
votes
0
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1.9k
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Comment: C: Convert chromosome headings in VCF file from Trinity format to chr:pos format
7.2 years ago by TrentGenomics ▴ 30
0
votes
6
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1.9k
views
Convert chromosome headings in VCF file from Trinity format to chr:pos format
snp
updated 7.2 years ago by 164k • written 7.2 years ago by ▴ 30
0
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2
replies
9.2k
views
Comment: C: Substituting Snps On Reference Genome Assemblies
7.2 years ago by TrentGenomics ▴ 30
0
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1
reply
2.5k
views
Comment: C: How to extract SNPs between samples and not between samples and reference
7.3 years ago by TrentGenomics ▴ 30
0
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0
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2.5k
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Comment: C: How to extract SNPs between samples and not between samples and reference
7.3 years ago by TrentGenomics ▴ 30
0
votes
1
reply
2.5k
views
Comment: C: How to extract SNPs between samples and not between samples and reference
7.3 years ago by TrentGenomics ▴ 30
0
votes
1
reply
2.5k
views
Comment: C: How to extract SNPs between samples and not between samples and reference
updated 7.3 years ago by 164k • written 7.3 years ago by ▴ 30
0
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11
replies
2.5k
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How to extract SNPs between samples and not between samples and reference
SNP RNA-Seq
7.3 years ago by TrentGenomics ▴ 30
0
votes
1
reply
2.5k
views
Comment: A: How to extract SNPs between samples and not between samples and reference
7.3 years ago by TrentGenomics ▴ 30
1
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0
replies
1.6k
views
Comment: C: Very strange .vcf output after running samtools and bcftools variant calling pip
7.3 years ago by TrentGenomics ▴ 30
2
votes
4
replies
1.6k
views
Very strange .vcf output after running samtools and bcftools variant calling pipeline!
RNA-Seq SNP
updated 7.3 years ago by 47k • written 7.3 years ago by ▴ 30
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