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5
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5
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3.7k
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Error: htsjdk.tribble.TribbleExpection: The provided VCF file is malformed at approximately line number 5880: Duplicate allele added to VariantContex…
SNP genome next-gen Assembly
updated 14 months ago by ▴ 70 • written 3.8 years ago by ▴ 530
0
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2
replies
3.6k
views
Sleuth_fit error "`Error in if (sum(valid) == 0) { : missing value where TRUE/FALSE needed"
R rna-seq software error Assembly
updated 2.8 years ago by ▴ 370 • written 7.0 years ago by ▴ 530
3
votes
1
reply
927
views
Liftover using gVCF
genome assembly GATK liftover
updated 2.9 years ago by ★ 4.8k • written 2.9 years ago by ▴ 530
0
votes
1
reply
918
views
Running SnpSift in parallel
VCF WGS Annotation
updated 3.1 years ago by 164k • written 3.1 years ago by ▴ 530
0
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0
replies
1.2k
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Comment: Comment: Case Control count per variant
3.2 years ago by williamsbrian5064 ▴ 530
0
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1
reply
1.2k
views
Comment: Comment: Case Control count per variant
3.2 years ago by williamsbrian5064 ▴ 530
1
vote
4
replies
1.2k
views
Case Control count per variant
WGS VCF Annotation NGS
3.2 years ago by williamsbrian5064 ▴ 530
0
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1
reply
2.7k
views
Comment: Comment: Get REVEL plugin started with VEP
3.3 years ago by williamsbrian5064 ▴ 530
0
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3
replies
1.2k
views
Comment: Comment: How to calculate combined expression of two genes
3.5 years ago by williamsbrian5064 ▴ 530
4
votes
5
replies
1.2k
views
How to calculate combined expression of two genes
R rna-seq
updated 3.5 years ago by 88k • written 3.5 years ago by ▴ 530
4
votes
4
replies
2.7k
views
GATK markduplicates out of memory
Assembly WGS MarkDuplicates GATK
updated 3.5 years ago by 164k • written 3.5 years ago by ▴ 530
0
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1
reply
2.7k
views
Comment: Comment: GATK markduplicates out of memory
3.5 years ago by williamsbrian5064 ▴ 530
6
votes
2
replies
2.1k
views
bcftools vcf2sex
genomics genome alignment genotyping
updated 3.6 years ago by ★ 1.4k • written 3.6 years ago by ▴ 530
0
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1
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3.4k
views
Comment: C: PLINK:Error: Variant '.' is not biallelic. To obtain a full list of merge failur
3.6 years ago by williamsbrian5064 ▴ 530
0
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0
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3.4k
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Comment: C: PLINK:Error: Variant '.' is not biallelic. To obtain a full list of merge failur
3.6 years ago by williamsbrian5064 ▴ 530
3
votes
5
replies
3.4k
views
PLINK:Error: Variant '.' is not biallelic. To obtain a full list of merge failures
SNP Assembly genome next-gen
3.6 years ago by williamsbrian5064 ▴ 530
0
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1
reply
3.6k
views
Comment: C: bcftools +fill-tag does not work in loop
3.7 years ago by williamsbrian5064 ▴ 530
0
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0
replies
2.3k
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Comment: C: Minor allele count report with --freq count in PLINK2
3.7 years ago by williamsbrian5064 ▴ 530
0
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1
reply
3.6k
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Comment: C: bcftools +fill-tag does not work in loop
3.7 years ago by williamsbrian5064 ▴ 530
0
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0
replies
2.1k
views
Comment: C: Remove Chr:position format to just Chr
3.7 years ago by williamsbrian5064 ▴ 530
1
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1
reply
2.1k
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Comment: C: Remove Chr:position format to just Chr
3.7 years ago by williamsbrian5064 ▴ 530
0
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0
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2.1k
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Comment: C: Remove Chr:position format to just Chr
3.7 years ago by williamsbrian5064 ▴ 530
0
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1
reply
2.3k
views
Comment: C: Minor allele count report with --freq count in PLINK2
3.7 years ago by williamsbrian5064 ▴ 530
1
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2
replies
2.1k
views
Answer: A: Remove Chr:position format to just Chr
3.7 years ago by williamsbrian5064 ▴ 530
0
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0
replies
2.1k
views
Comment: C: Remove Chr:position format to just Chr
3.7 years ago by williamsbrian5064 ▴ 530
0
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1
reply
1.3k
views
Answer: A: Get TSS information from GFF3 file depending on strand
3.7 years ago by williamsbrian5064 ▴ 530
2
votes
0
replies
611
views
Comment: C: Different symbols in genotype field in VCF files
3.7 years ago by williamsbrian5064 ▴ 530
0
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0
replies
4.8k
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Comment: C: Remove uncharacterized chromosomes from reference fasta file
3.7 years ago by williamsbrian5064 ▴ 530
0
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0
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4.8k
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Comment: C: Remove uncharacterized chromosomes from reference fasta file
3.7 years ago by williamsbrian5064 ▴ 530
3
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1
reply
4.8k
views
Comment: C: Remove uncharacterized chromosomes from reference fasta file
3.7 years ago by williamsbrian5064 ▴ 530
17
votes
7
replies
4.8k
views
Remove uncharacterized chromosomes from reference fasta file
Assembly genome sequence next-gen
updated 3.7 years ago by 13k • written 3.7 years ago by ▴ 530
0
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0
replies
3.9k
views
Comment: C: How to sort fasta file numerically
3.7 years ago by williamsbrian5064 ▴ 530
0
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0
replies
3.9k
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Comment: C: How to sort fasta file numerically
3.7 years ago by williamsbrian5064 ▴ 530
0
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1
reply
3.9k
views
Comment: C: How to sort fasta file numerically
3.7 years ago by williamsbrian5064 ▴ 530
0
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1
reply
3.9k
views
Comment: C: How to sort fasta file numerically
3.7 years ago by williamsbrian5064 ▴ 530
11
votes
8
replies
3.9k
views
How to sort fasta file numerically
Assembly genome sequence
updated 3.7 years ago by 85k • written 3.7 years ago by ▴ 530
2
votes
3
replies
7.5k
views
Samtools bam2fq converting bam file to fastq. What happens to unmapped reads?
Assembly alignment sequencing next-gen
updated 3.8 years ago by 15k • written 3.8 years ago by ▴ 530
0
votes
0
replies
1.3k
views
Comment: C: Error occur during tophat2 downloading
3.8 years ago by williamsbrian5064 ▴ 530
0
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1
reply
3.7k
views
Comment: C: Error: htsjdk.tribble.TribbleExpection: The provided VCF file is malformed at ap
3.8 years ago by williamsbrian5064 ▴ 530
0
votes
1
reply
1.2k
views
Computing all possible single amino acid substitutions for a protein
genome gene
updated 3.9 years ago by • 0 • written 5.4 years ago by ▴ 530
0
votes
1
reply
2.1k
views
Comment: C: How to remove contamination from WGS fastq files
4.1 years ago by williamsbrian5064 ▴ 530
0
votes
1
reply
2.1k
views
Comment: C: How to remove contamination from WGS fastq files
4.1 years ago by williamsbrian5064 ▴ 530
0
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1
reply
2.1k
views
Comment: C: How to remove contamination from WGS fastq files
4.1 years ago by williamsbrian5064 ▴ 530
8
votes
10
replies
2.1k
views
How to remove contamination from WGS fastq files
next-gen sequence
updated 4.1 years ago by 147k • written 4.1 years ago by ▴ 530
0
votes
1
reply
2.1k
views
Comment: C: How to remove contamination from WGS fastq files
4.1 years ago by williamsbrian5064 ▴ 530
1
vote
0
replies
5.4k
views
Comment: C: No alias or index file found for protein database
5.1 years ago by williamsbrian5064 ▴ 530
0
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0
replies
5.4k
views
Comment: C: No alias or index file found for protein database
5.1 years ago by williamsbrian5064 ▴ 530
0
votes
1
reply
19k
views
Comment: C: Best tool for variant calling
5.1 years ago by williamsbrian5064 ▴ 530
0
votes
2
replies
792
views
samtools having to use -A input option
assembly next-gen genome alignment
5.3 years ago by williamsbrian5064 ▴ 530
17
votes
37
replies
5.4k
views
No alias or index file found for protein database
next-gen software error sequence
updated 5.4 years ago by 20 • written 5.6 years ago by ▴ 530
195 results • Page 1 of 4
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