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539
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Mapping difference with BWA
variant-calling samtools bam BWA genomics
updated 16 months ago by 89k • written 16 months ago by ▴ 20
1
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1
reply
683
views
geom_bar issue in ggplot2 with xlim()
geom_bar ggplot2 statistics R
updated 16 months ago by 89k • written 16 months ago by ▴ 20
0
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3
replies
1.2k
views
How to identify gaps in a genome?
awk seqkit assembly fasta genome
updated 17 months ago by 7.9k • written 17 months ago by ▴ 20
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0
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1.2k
views
Comment: Comment: How to identify gaps in a genome?
17 months ago by rj.rezwan ▴ 20
3
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1
reply
718
views
how to change the gene header names in a fasta file?
fasta bioawk awk seqkit
updated 17 months ago by 45k • written 17 months ago by ▴ 20
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0
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1.5k
views
Comment: Comment: kmer analysis for genome size estimation
17 months ago by rj.rezwan ▴ 20
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0
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1.5k
views
Comment: Comment: kmer analysis for genome size estimation
17 months ago by rj.rezwan ▴ 20
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4
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1.5k
views
kmer analysis for genome size estimation
kmer merqury allotetraploid pacbio hifiasm
17 months ago by rj.rezwan ▴ 20
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0
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1.1k
views
Comment: Comment: why the file is low after combining the Hi-C reads using Arima genomics pipeline
18 months ago by rj.rezwan ▴ 20
0
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1
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1.1k
views
Comment: Comment: why the file is low after combining the Hi-C reads using Arima genomics pipeline
18 months ago by rj.rezwan ▴ 20
0
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1
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1.1k
views
Comment: Comment: why the file is low after combining the Hi-C reads using Arima genomics pipeline
18 months ago by rj.rezwan ▴ 20
0
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6
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1.1k
views
why the file is low after combining the Hi-C reads using Arima genomics pipeline of mapping
bwa mapping genome samtools plants
18 months ago by rj.rezwan ▴ 20
0
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0
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530
views
issue with the Arima genomics pipeline for Hi-C scaffolding
plant pacbio assembly genome Hi-C
18 months ago by rj.rezwan ▴ 20
1
vote
1
reply
615
views
Is there any database for transposable elements in cactus plants
EDTA transposable-elements
updated 18 months ago by 45k • written 19 months ago by ▴ 20
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0
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1.3k
views
Comment: Comment: allele matching between identical genotypes
19 months ago by rj.rezwan ▴ 20
0
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4
replies
1.3k
views
allele matching between identical genotypes
haplotyping plink vcf GATK varaint
19 months ago by rj.rezwan ▴ 20
0
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0
replies
1.3k
views
Comment: Comment: allele matching between identical genotypes
19 months ago by rj.rezwan ▴ 20
0
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1
reply
780
views
how to run the compare_genomes for comparative analysis
genome orthofinder evolution
updated 21 months ago by ★ 3.1k • written 21 months ago by ▴ 20
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2
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4.5k
views
Comment: Comment: How to download multiple genome files using command line (MacOS) using datasets
21 months ago by rj.rezwan ▴ 20
0
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0
replies
2.7k
views
Comment: Comment: file conversion from gtf to gff3 for evidence modeler
23 months ago by rj.rezwan ▴ 20
0
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1
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2.7k
views
Comment: Comment: file conversion from gtf to gff3 for evidence modeler
23 months ago by rj.rezwan ▴ 20
0
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1
reply
2.7k
views
Comment: Comment: file conversion from gtf to gff3 for evidence modeler
updated 23 months ago by 45k • written 23 months ago by ▴ 20
0
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1
reply
2.7k
views
Comment: Comment: file conversion from gtf to gff3 for evidence modeler
23 months ago by rj.rezwan ▴ 20
0
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1
reply
2.7k
views
Comment: Comment: file conversion from gtf to gff3 for evidence modeler
23 months ago by rj.rezwan ▴ 20
1
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10
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2.7k
views
file conversion from gtf to gff3 for evidence modeler
gff3 stringtie gtf
23 months ago by rj.rezwan ▴ 20
0
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1
reply
1.6k
views
Comment: Comment: samtools produces truncated error during merging the bam files
23 months ago by rj.rezwan ▴ 20
2
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3
replies
1.6k
views
samtools produces truncated error during merging the bam files
bam samtools HISAT
updated 23 months ago by 45k • written 23 months ago by ▴ 20
2
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5
replies
1.6k
views
6 follow
Forum: Biostar as a next generation version
meta mobile-app
updated 23 months ago by 45k • written 2.1 years ago by ▴ 20
0
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1
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1.7k
views
Comment: Comment: investigate the inversions in comparison of assembled genome with reference geno
2.1 years ago by rj.rezwan ▴ 20
0
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3
replies
1.7k
views
investigate the inversions in comparison of assembled genome with reference genome
genome assembly scaffold ragtag dotplot
updated 2.1 years ago by ▴ 600 • written 2.1 years ago by ▴ 20
0
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1
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1.9k
views
Comment: Comment: How to find the coverage of the assembled contigs of the PacBio long reads?
2.1 years ago by rj.rezwan ▴ 20
2
votes
3
replies
1.9k
views
How to find the coverage of the assembled contigs of the PacBio long reads?
PacBio assembly coverage
updated 2.1 years ago by ★ 1.5k • written 2.1 years ago by ▴ 20
0
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0
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1.3k
views
Comment: Comment: How to make the SNP density plot using hapmap file
2.2 years ago by rj.rezwan ▴ 20
1
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2
replies
1.3k
views
How to make the SNP density plot using hapmap file
vcf haplotype hapmap CMplot
2.2 years ago by rj.rezwan ▴ 20
0
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0
replies
595
views
How to perform a phylogenetic analysis from a vcf file
variants haplotyping phylogeny vcf
2.3 years ago by rj.rezwan ▴ 20
4
votes
2
replies
1.9k
views
How to calculate kinship matrix table from vcf file
variants haplotyping kinship heatmap
updated 2.3 years ago by 11k • written 2.3 years ago by ▴ 20
0
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0
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482
views
how to retrieve the chunk of every chromosome from a vcf file
haplotyping varaints
2.4 years ago by rj.rezwan ▴ 20
0
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0
replies
1.3k
views
Comment: Comment: how to make a header name in a haplotyping script of gatk?
2.4 years ago by rj.rezwan ▴ 20
0
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0
replies
1.3k
views
Comment: Comment: how to make a header name in a haplotyping script of gatk?
2.4 years ago by rj.rezwan ▴ 20
2
votes
6
replies
1.3k
views
how to make a header name in a haplotyping script of gatk?
headername gatk haplotypecalling
2.4 years ago by rj.rezwan ▴ 20
0
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1
reply
1.3k
views
Comment: Comment: how to make a header name in a haplotyping script of gatk?
2.4 years ago by rj.rezwan ▴ 20
0
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1
reply
1.8k
views
Comment: Comment: why CombineGCVFs in gatk not showing all the samples name?
updated 2.4 years ago by 45k • written 2.4 years ago by ▴ 20
0
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1
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1.8k
views
Comment: Comment: why CombineGCVFs in gatk not showing all the samples name?
2.4 years ago by rj.rezwan ▴ 20
0
votes
1
reply
1.8k
views
Comment: Comment: why CombineGCVFs in gatk not showing all the samples name?
2.4 years ago by rj.rezwan ▴ 20
2
votes
7
replies
1.8k
views
why CombineGCVFs in gatk not showing all the samples name?
haplotypecalling CombineGVCFs GATK
updated 2.4 years ago by 45k • written 2.4 years ago by ▴ 20
0
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1
reply
1.8k
views
Comment: Comment: error with CombineGVCFs to join large number of files
2.5 years ago by rj.rezwan ▴ 20
7
votes
5
replies
1.8k
views
error with CombineGVCFs to join large number of files
haplotypecalling CombineGVCFs GATK
2.5 years ago by rj.rezwan ▴ 20
1
vote
1
reply
699
views
Why GATK is slow with haplotypecalling
GATK HaplotypeCalling
updated 2.5 years ago by 166k • written 2.5 years ago by ▴ 20
0
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0
replies
2.4k
views
Comment: Comment: GATK error of Argument --emit-ref-confidence
2.6 years ago by rj.rezwan ▴ 20
0
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1
reply
2.4k
views
Comment: Comment: GATK error of Argument --emit-ref-confidence
2.6 years ago by rj.rezwan ▴ 20
85 results • Page 1 of 2
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