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5
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5
replies
1.5k
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A first trial in machine learning for a classification problem: data set up and logic
caret MachineLearning R classifier
updated 3.0 years ago by ▴ 930 • written 3.0 years ago by ▴ 100
1
vote
0
replies
729
views
What is your favourite database to extract known (=experimentally validated) disease-genes sets?
diseases databases genes
3.5 years ago by jamespower ▴ 100
3
votes
1
reply
1.1k
views
What is the fastest way to create an online server that allows searching through a table
database searchable online query
updated 3.8 years ago by ★ 2.2k • written 3.8 years ago by ▴ 100
3
votes
7
replies
3.6k
views
How to calculate frequencies of SNPs with respect to a particular allele by plink?
frequency snp plink
4.1 years ago by jamespower ▴ 100
1
vote
7
replies
3.6k
views
List of TCGA genes differentially expressed in normal versus tumor
RNA-Seq TCGA
updated 4.2 years ago by 7.6k • written 6.2 years ago by ▴ 100
1
vote
5
replies
1.7k
views
How to best summarize read counts overlapping promoters when read counts are defined from different regions
RNA-Seq gene next-gen assembly ChIP-Seq
updated 5.0 years ago by 12k • written 5.0 years ago by ▴ 100
2
votes
14
replies
4.7k
views
QQ plots for eqtl data
MatrixEQTL eqtl
updated 5.1 years ago by 20 • written 7.0 years ago by ▴ 100
3
votes
4
replies
8.2k
views
Plink Error: Duplicate ID 'chr:pos:A1:A2' generated by --set-missing-var-ids
plink duplicates missing id
updated 6.2 years ago by 45k • written 6.2 years ago by ▴ 100
6
votes
1
reply
1.1k
views
How to combine RNA-Seq from Novaseq separated in lanes, after fpkm have been computed?
rna-seq gene next-gen
6.4 years ago by jamespower ▴ 100
8
votes
5
replies
1.9k
views
What is the best and latest package/software for post-processing of Hi-C (Chromosome Conformation Capture)?
Hic R gwas next-gen gene
updated 6.5 years ago by ▴ 190 • written 7.0 years ago by ▴ 100
5
votes
4
replies
3.0k
views
Format in vcf files in Geuvadis data not recognized
samtools format vcf bcftools geuvadis
updated 6.8 years ago by 166k • written 6.8 years ago by ▴ 100
0
votes
0
replies
1.4k
views
What is a good strategy to find hit regions from a GWAS in R?
R GenomicRanges GWAS
7.1 years ago by jamespower ▴ 100
2
votes
3
replies
4.3k
views
Plink associations using covariates as numeric or dummy
plink linear association
7.1 years ago by jamespower ▴ 100
10
votes
4
replies
5.2k
views
Compute confidence intervals for lambda genomic factor statistics
R confidence intervals chi
7.2 years ago by jamespower ▴ 100
14 results • Page 1 of 1
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