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Showing :
questions
0
votes
3
replies
1.3k
views
Handle inflated log2FC while using interaction term in DESeq2
RNAseq
DESeq2
R
3.4 years ago by
Shred
★ 1.6k
2
votes
0
replies
613
views
Stringtie on non model organism - how to best proceed for DE analysis?
Salmon
Stringtie
DESeq
transcriptome
rna-seq
3.5 years ago by
Shred
★ 1.6k
0
votes
0
replies
517
views
Assemble 3'mRNAseq with standard RNAseq
stringtie
RNAseq
assembly
3mRNAseq
3.7 years ago by
Shred
★ 1.6k
11
votes
11
replies
18k
views
8 follow
Faster way to get GC content and Coverage from .fasta
sequencing
next-gen
genome
bash
fasta
3.0 years ago by
Shred
★ 1.6k
2
votes
4
replies
1.4k
views
Find read distribution over every gene in RNA-seq
RNA-Seq
python
updated 4.3 years ago by
Istvan Albert
102k • written 4.3 years ago by
Shred
★ 1.6k
4
votes
7
replies
2.3k
views
How much the sorting order of a gff file matters?
gff
RNA-Seq
annotation
updated 4.4 years ago by
Juke34
9.0k • written 4.4 years ago by
Shred
★ 1.6k
2
votes
10
replies
5.4k
views
Avoid download limit from NCBI entrez with Biopython using API key
biopython
ncbi
entrez
6.0 years ago by
Shred
★ 1.6k
8
votes
22
replies
3.1k
views
GenBank features don't extract sequences based on condition Biopython
biopython
genbank
annotation
6.0 years ago by
Shred
★ 1.6k
6
votes
8
replies
4.0k
views
Trim sequences based on alignment in python
biopython
python
alignment
updated 6.0 years ago by
Joe
22k • written 6.0 years ago by
Shred
★ 1.6k
1
vote
4
replies
1.9k
views
Get just GenBank record while downloading genome with Biopython
Biopython
Entrez
Genome
updated 6.1 years ago by
vkkodali_ncbi
★ 3.8k • written 6.1 years ago by
Shred
★ 1.6k
0
votes
4
replies
2.7k
views
Find all sequence of a specific genus amplified by a couple of primers
alignment
pcr
primer
sequence
6.6 years ago by
Shred
★ 1.6k
1
vote
10
replies
1.9k
views
Get taxonomy into a CDS from genomic custom database
ncbi
taxonomy
updated 22 months ago by
Ram
44k • written 6.6 years ago by
Shred
★ 1.6k
0
votes
2
replies
2.0k
views
Display full information about taxa instead of staxids in BLASTn
blast
genomic
taxonomy
6.8 years ago by
Shred
★ 1.6k
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