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3
votes
3
replies
837
views
Strandness of Isoseq HiFi reads?
minimap2 pacbio isoseq
updated 5 weeks ago by ▴ 40 • written 2.1 years ago by ▴ 140
1
vote
1
reply
472
views
How to split a folder full of pod5 by phred score?
phred qc ont nanopore pod5
updated 5 months ago by 141k • written 5 months ago by ▴ 140
4
votes
4
replies
1.0k
views
Minimap2 map-pb index for ONT reads
mapping minimap2 nanopore pacbio long-read
updated 8 months ago by 141k • written 8 months ago by ▴ 140
0
votes
0
replies
1.0k
views
Comment: Comment: Minimap2 map-pb index for ONT reads
8 months ago by compuTE ▴ 140
3
votes
4
replies
1.7k
views
RSeQC confusing output - Half fails to determine, half is reverse strand
RNA-Seq rseqc pair-end
updated 17 months ago by ★ 4.3k • written 3.2 years ago by ▴ 140
0
votes
0
replies
924
views
Comment: Comment: Representing several BAM files into one?
2.0 years ago by compuTE ▴ 140
0
votes
1
reply
1.1k
views
Comment: Comment: FastQ files: Double demultiplexing
2.2 years ago by compuTE ▴ 140
2
votes
3
replies
1.1k
views
FastQ files: Double demultiplexing
demultiplex bcl2fastq fastq index illumina
updated 2.2 years ago by 141k • written 2.2 years ago by ▴ 140
0
votes
0
replies
893
views
Comment: Comment: Do I need to trim the reads on samples with <0.2% adapter content?
2.3 years ago by compuTE ▴ 140
0
votes
0
replies
893
views
Comment: Comment: Do I need to trim the reads on samples with <0.2% adapter content?
2.3 years ago by compuTE ▴ 140
3
votes
4
replies
893
views
Do I need to trim the reads on samples with <0.2% adapter content?
adapter map fastqc trim
2.3 years ago by compuTE ▴ 140
0
votes
0
replies
505
views
RSeQC - 3' bias on polyA RNAseq goes wrong!
bias rnaseq rseqc genebody_coverage
2.4 years ago by compuTE ▴ 140
1
vote
1
reply
1.5k
views
Do you RegressOut sex?
rnaseq singlecell 10x seurat
updated 2.5 years ago by ▴ 50 • written 2.5 years ago by ▴ 140
2
votes
5
replies
1.1k
views
Same strand, same QNAME different FLAG?
strand featureCounts SAM RNAseq
2.7 years ago by compuTE ▴ 140
1
vote
0
replies
1.1k
views
Answer: Answer: Same strand, same QNAME different FLAG?
2.7 years ago by compuTE ▴ 140
5
votes
8
replies
2.0k
views
Strand specific quantification with strand-splitted BAM files
featureCounts SAM strand RNAseq
updated 2.7 years ago by 100k • written 2.7 years ago by ▴ 140
1
vote
1
reply
2.0k
views
Answer: Answer: Strand specific quantification with strand-splitted BAM files
2.7 years ago by compuTE ▴ 140
1
vote
0
replies
2.0k
views
Comment: Comment: Strand specific quantification with strand-splitted BAM files
2.7 years ago by compuTE ▴ 140
0
votes
1
reply
2.0k
views
Comment: Comment: Strand specific quantification with strand-splitted BAM files
2.7 years ago by compuTE ▴ 140
0
votes
0
replies
2.0k
views
Comment: Comment: Strand specific quantification with strand-splitted BAM files
2.7 years ago by compuTE ▴ 140
0
votes
0
replies
1.1k
views
Comment: Comment: Same strand, same QNAME different FLAG?
2.7 years ago by compuTE ▴ 140
0
votes
1
reply
1.1k
views
Comment: Comment: Same strand, same QNAME different FLAG?
2.7 years ago by compuTE ▴ 140
0
votes
0
replies
2.1k
views
Question about FindMarkers avg_logFC and how to get all features from an assay
seurat singlecell Seurat
3.0 years ago by compuTE ▴ 140
0
votes
1
reply
1.2k
views
Comment: Comment: Getting libType without running quantification with Salmon
3.0 years ago by compuTE ▴ 140
8
votes
3
replies
1.2k
views
Getting libType without running quantification with Salmon
strandness salmon rnaseq python strand
updated 3.0 years ago by 6.5k • written 3.0 years ago by ▴ 140
0
votes
0
replies
1.0k
views
Comment: Comment: Transcript enrichment in Illumina RNAseq
3.0 years ago by compuTE ▴ 140
1
vote
0
replies
12k
views
Comment: Comment: From BAM to BAI to BIGWIG
3.0 years ago by compuTE ▴ 140
0
votes
3
replies
1.0k
views
Transcript enrichment in Illumina RNAseq
enrichment transcriptomics illumina rnaseq
3.0 years ago by compuTE ▴ 140
0
votes
0
replies
1.3k
views
Rule in snakemake using singularity: unterminated quoted string
singularity snakemake docker cellranger
3.7 years ago by compuTE ▴ 140
2
votes
2
replies
924
views
Representing several BAM files into one?
deepTools BAM bamCompare
2.0 years ago by compuTE ▴ 140
0
votes
0
replies
1.5k
views
Comment: C: Different mappings, different PCAs using TEtranscripts
5.0 years ago by compuTE ▴ 140
0
votes
1
reply
1.5k
views
Comment: C: Different mappings, different PCAs using TEtranscripts
5.0 years ago by compuTE ▴ 140
0
votes
0
replies
1.5k
views
Comment: C: Different mappings, different PCAs using TEtranscripts
5.0 years ago by compuTE ▴ 140
2
votes
6
replies
1.5k
views
Different mappings, different PCAs using TEtranscripts
pca TEtranscripts
5.0 years ago by compuTE ▴ 140
0
votes
0
replies
2.6k
views
Comment: C: StringTie strandness of library in dUTP protocol
5.0 years ago by compuTE ▴ 140
4
votes
3
replies
2.6k
views
StringTie strandness of library in dUTP protocol
stringtie libraryprep rnaseq dutp
updated 5.0 years ago by 8.5k • written 5.0 years ago by ▴ 140
0
votes
0
replies
3.7k
views
Comment: C: DESeq interactions: What genes that are different between two experiments affect
5.1 years ago by compuTE ▴ 140
8
votes
2
replies
3.7k
views
DESeq interactions: What genes that are different between two experiments affects the conditions
DESeq2 RNA-Seq DEA interactions
updated 5.1 years ago by 14k • written 5.1 years ago by ▴ 140
0
votes
1
reply
7.5k
views
Comment: C: Comparing Two Bam Files Obtained From The Same Files And The Exact Settings
5.1 years ago by compuTE ▴ 140
0
votes
0
replies
1.4k
views
Comment: C: Count matrix showing different results than UCSC tracks
5.2 years ago by compuTE ▴ 140
0
votes
3
replies
1.4k
views
Count matrix showing different results than UCSC tracks
ucsc featurecounts bigwig bam mm10
5.2 years ago by compuTE ▴ 140
0
votes
1
reply
12k
views
Comment: C: From BAM to BAI to BIGWIG
5.2 years ago by compuTE ▴ 140
14
votes
5
replies
12k
views
From BAM to BAI to BIGWIG
bigwig samtools index bamCoverage bai
3.0 years ago by compuTE ▴ 140
0
votes
0
replies
1.5k
views
Comment: C: Looking for chimp genome index (STAR)
5.6 years ago by compuTE ▴ 140
3
votes
5
replies
1.5k
views
Looking for chimp genome index (STAR)
STAR mapping chimpanzee chimp genomeindex
updated 5.6 years ago by 13k • written 5.6 years ago by ▴ 140
0
votes
1
reply
1.5k
views
Comment: C: Looking for chimp genome index (STAR)
5.6 years ago by compuTE ▴ 140
0
votes
0
replies
3.0k
views
Comment: C: Illegal instruction (core dumped) - Indexing a reference genome with STAR
6.1 years ago by compuTE ▴ 140
1
vote
4
replies
3.0k
views
Illegal instruction (core dumped) - Indexing a reference genome with STAR
RNA-Seq mapping STAR reference indexing
6.1 years ago by compuTE ▴ 140
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