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0
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0
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627
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Comment: Comment: Representing several BAM files into one?
12 weeks ago by compuTE ▴ 120
3
votes
1
reply
176
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Strandness of Isoseq HiFi reads?
minimap2 pacbio isoseq
updated 3 months ago by ▴ 200 • written 3 months ago by ▴ 120
0
votes
1
reply
414
views
Comment: Comment: FastQ files: Double demultiplexing
4 months ago by compuTE ▴ 120
2
votes
3
replies
414
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FastQ files: Double demultiplexing
demultiplex bcl2fastq fastq index illumina
updated 4 months ago by 117k • written 4 months ago by ▴ 120
0
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0
replies
367
views
Comment: Comment: Do I need to trim the reads on samples with <0.2% adapter content?
5 months ago by compuTE ▴ 120
0
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0
replies
367
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Comment: Comment: Do I need to trim the reads on samples with <0.2% adapter content?
5 months ago by compuTE ▴ 120
3
votes
4
replies
367
views
Do I need to trim the reads on samples with <0.2% adapter content?
adapter map fastqc trim
5 months ago by compuTE ▴ 120
0
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0
replies
187
views
RSeQC - 3' bias on polyA RNAseq goes wrong!
bias rnaseq rseqc genebody_coverage
7 months ago by compuTE ▴ 120
1
vote
1
reply
444
views
Do you RegressOut sex?
rnaseq singlecell 10x seurat
updated 8 months ago by ▴ 40 • written 8 months ago by ▴ 120
2
votes
5
replies
593
views
Same strand, same QNAME different FLAG?
strand featureCounts SAM RNAseq
11 months ago by compuTE ▴ 120
1
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0
replies
593
views
Answer: Answer: Same strand, same QNAME different FLAG?
11 months ago by compuTE ▴ 120
5
votes
8
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934
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Strand specific quantification with strand-splitted BAM files
featureCounts SAM strand RNAseq
updated 11 months ago by 93k • written 11 months ago by ▴ 120
1
vote
1
reply
934
views
Answer: Answer: Strand specific quantification with strand-splitted BAM files
11 months ago by compuTE ▴ 120
1
vote
0
replies
934
views
Comment: Comment: Strand specific quantification with strand-splitted BAM files
11 months ago by compuTE ▴ 120
0
votes
1
reply
934
views
Comment: Comment: Strand specific quantification with strand-splitted BAM files
11 months ago by compuTE ▴ 120
0
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0
replies
934
views
Comment: Comment: Strand specific quantification with strand-splitted BAM files
11 months ago by compuTE ▴ 120
0
votes
0
replies
593
views
Comment: Comment: Same strand, same QNAME different FLAG?
11 months ago by compuTE ▴ 120
0
votes
1
reply
593
views
Comment: Comment: Same strand, same QNAME different FLAG?
11 months ago by compuTE ▴ 120
0
votes
0
replies
836
views
Question about FindMarkers avg_logFC and how to get all features from an assay
seurat singlecell Seurat
14 months ago by compuTE ▴ 120
0
votes
1
reply
629
views
Comment: Comment: Getting libType without running quantification with Salmon
14 months ago by compuTE ▴ 120
6
votes
3
replies
629
views
Getting libType without running quantification with Salmon
strandness salmon rnaseq python strand
updated 14 months ago by 5.3k • written 14 months ago by ▴ 120
0
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0
replies
639
views
Comment: Comment: Transcript enrichment in Illumina RNAseq
14 months ago by compuTE ▴ 120
1
vote
0
replies
9.0k
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Comment: Comment: From BAM to BAI to BIGWIG
14 months ago by compuTE ▴ 120
0
votes
3
replies
639
views
Transcript enrichment in Illumina RNAseq
enrichment transcriptomics illumina rnaseq
14 months ago by compuTE ▴ 120
0
votes
2
replies
571
views
RSeQC confusing output - Half fails to determine, half is reverse strand
RNA-Seq rseqc pair-end
updated 7 months ago by ▴ 20 • written 17 months ago by ▴ 120
0
votes
0
replies
894
views
Rule in snakemake using singularity: unterminated quoted string
singularity snakemake docker cellranger
23 months ago by compuTE ▴ 120
2
votes
2
replies
627
views
Representing several BAM files into one?
deepTools BAM bamCompare
12 weeks ago by compuTE ▴ 120
0
votes
0
replies
880
views
Comment: C: Different mappings, different PCAs using TEtranscripts
3.2 years ago by compuTE ▴ 120
0
votes
1
reply
880
views
Comment: C: Different mappings, different PCAs using TEtranscripts
3.2 years ago by compuTE ▴ 120
0
votes
0
replies
880
views
Comment: C: Different mappings, different PCAs using TEtranscripts
3.2 years ago by compuTE ▴ 120
2
votes
6
replies
880
views
Different mappings, different PCAs using TEtranscripts
pca TEtranscripts
3.2 years ago by compuTE ▴ 120
0
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0
replies
1.8k
views
Comment: C: StringTie strandness of library in dUTP protocol
3.2 years ago by compuTE ▴ 120
4
votes
3
replies
1.8k
views
StringTie strandness of library in dUTP protocol
stringtie libraryprep rnaseq dutp
updated 3.2 years ago by ★ 7.1k • written 3.2 years ago by ▴ 120
0
votes
0
replies
2.7k
views
Comment: C: DESeq interactions: What genes that are different between two experiments affect
3.3 years ago by compuTE ▴ 120
8
votes
2
replies
2.7k
views
DESeq interactions: What genes that are different between two experiments affects the conditions
DESeq2 RNA-Seq DEA interactions
updated 3.3 years ago by 12k • written 3.3 years ago by ▴ 120
0
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1
reply
6.3k
views
Comment: C: Comparing Two Bam Files Obtained From The Same Files And The Exact Settings
3.3 years ago by compuTE ▴ 120
0
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0
replies
923
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Comment: C: Count matrix showing different results than UCSC tracks
3.4 years ago by compuTE ▴ 120
0
votes
3
replies
923
views
Count matrix showing different results than UCSC tracks
ucsc featurecounts bigwig bam mm10
3.4 years ago by compuTE ▴ 120
0
votes
1
reply
9.0k
views
Comment: C: From BAM to BAI to BIGWIG
3.4 years ago by compuTE ▴ 120
14
votes
5
replies
9.0k
views
From BAM to BAI to BIGWIG
bigwig samtools index bamCoverage bai
14 months ago by compuTE ▴ 120
0
votes
0
replies
1.1k
views
Comment: C: Looking for chimp genome index (STAR)
3.8 years ago by compuTE ▴ 120
3
votes
5
replies
1.1k
views
Looking for chimp genome index (STAR)
STAR mapping chimpanzee chimp genomeindex
updated 3.8 years ago by 12k • written 3.8 years ago by ▴ 120
0
votes
1
reply
1.1k
views
Comment: C: Looking for chimp genome index (STAR)
3.8 years ago by compuTE ▴ 120
0
votes
0
replies
2.0k
views
Comment: C: Illegal instruction (core dumped) - Indexing a reference genome with STAR
4.3 years ago by compuTE ▴ 120
1
vote
4
replies
2.0k
views
Illegal instruction (core dumped) - Indexing a reference genome with STAR
RNA-Seq mapping STAR reference indexing
4.3 years ago by compuTE ▴ 120
45 results • Page 1 of 1
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