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questions
0
votes
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replies
317
views
which genome size to use in Fisher's exact test for enrichment?
Fisher
enrichment
22 months ago by
druggable
▴ 60
1
vote
1
reply
511
views
What is a biologically meaningful size of gene module?
module
gene
updated 23 months ago by
andres.firrincieli
3.6k • written 23 months ago by
druggable
▴ 60
1
vote
2
replies
534
views
Where is Regulatoryciruits.org?
database
tfs
transcription
23 months ago by
druggable
▴ 60
1
vote
2
replies
1.1k
views
GCRMA normalization from data frame
microarray
normalization
updated 2.1 years ago by
Gordon Smyth
★ 7.0k • written 3.8 years ago by
druggable
▴ 60
2
votes
3
replies
781
views
Single sample vs. a control group in limma
expression
differential
updated 2.1 years ago by
i.sudbery
19k • written 2.1 years ago by
druggable
▴ 60
7
votes
4
replies
976
views
My PCA plot looks good but i don't have differentially expressed genes
PCA
expression
differential
2.1 years ago by
druggable
▴ 60
5
votes
4
replies
755
views
PCA does not show distinction in groups
pca
expression
differential
2.1 years ago by
druggable
▴ 60
1
vote
1
reply
533
views
How do i perform DGE if based on PCA the samples are separated along PC2 and not PC1?
PCA
expression
differential
updated 2.2 years ago by
swbarnes2
14k • written 2.2 years ago by
druggable
▴ 60
0
votes
0
replies
776
views
Construction of coexpression networks from multiple datasets
coexpression networks
coexpression
4.6 years ago by
druggable
▴ 60
0
votes
0
replies
851
views
Node degree-weighted graph
network biology
4.7 years ago by
druggable
▴ 60
2
votes
1
reply
1.0k
views
ChIP-Seq tag counts
ChIP-Seq
machine learning
updated 5.2 years ago by
WouterDeCoster
47k • written 5.2 years ago by
druggable
▴ 60
0
votes
1
reply
793
views
Histone modification patterns
chromatin pattern
5.3 years ago by
druggable
▴ 60
3
votes
1
reply
798
views
PPI networks in disease vs. healthy
PPI networks
updated 5.3 years ago by
Kevin Blighe
87k • written 5.3 years ago by
druggable
▴ 60
3
votes
2
replies
2.3k
views
Machine learning predictor has no correlation with output variable
machine learning
updated 5.4 years ago by
Jean-Karim Heriche
27k • written 5.4 years ago by
druggable
▴ 60
1
vote
6
replies
1.5k
views
Neural networks feature importance
neural network
updated 5.5 years ago by
karl.stamm
4.1k • written 5.5 years ago by
druggable
▴ 60
1
vote
7
replies
1.7k
views
Data Transformations for machine learning
machine learning
data transformation
5.6 years ago by
druggable
▴ 60
1
vote
1
reply
1.6k
views
ChIP-Seq Read Counts
ChIP-Seq
5.7 years ago by
druggable
▴ 60
1
vote
6
replies
1.2k
views
Sam to bowtie native format
ChIP-Seq
quest
updated 5.7 years ago by
h.mon
35k • written 5.7 years ago by
druggable
▴ 60
1
vote
3
replies
1.5k
views
Hierarchical clustering evaluation
clustering
gene expression
updated 5.8 years ago by
Jean-Karim Heriche
27k • written 5.8 years ago by
druggable
▴ 60
2
votes
1
reply
2.0k
views
dynamic tree cut
clustering
dynamictreecut
updated 5.8 years ago by
Jean-Karim Heriche
27k • written 5.8 years ago by
druggable
▴ 60
0
votes
1
reply
1.4k
views
Gene expression meta analysis
gene expression
transcription profiles
5.8 years ago by
druggable
▴ 60
0
votes
0
replies
928
views
Identification of co-regulated genes by clustering
gene expression
clustering
co-regulated genes
5.9 years ago by
druggable
▴ 60
4
votes
16
replies
3.9k
views
edgeR - normalized counts from multiple datasets
rna-seq
edger
normalization
updated 5.9 years ago by
1561775911
• 0 • written 5.9 years ago by
druggable
▴ 60
12
votes
6
replies
6.4k
views
edger model matrix design of linear model
edger
design matrix
differential expression
5.9 years ago by
druggable
▴ 60
3
votes
3
replies
1.5k
views
Train classifier based on unsupervised clustering of genes
RNA-Seq
machine learning
clustering
classification
5.9 years ago by
druggable
▴ 60
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