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0
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0
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1.3k
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Comment: Comment: ERROR::INVALID_TAG_NM:Record A, Read name B, NM tag (nucleotide differences) in
3 months ago by curious ▴ 890
0
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2
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1.3k
views
ERROR::INVALID_TAG_NM:Record A, Read name B, NM tag (nucleotide differences) in file [0] does not match reality [1]
bwa
3 months ago by curious ▴ 890
0
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1
reply
854
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Comment: Comment: Why am I getting the exact same MarkDuplicates results when passing a query or
3 months ago by curious ▴ 890
0
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0
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854
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Comment: Comment: Why am I getting the exact same MarkDuplicates results when passing a query or
3 months ago by curious ▴ 890
0
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4
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854
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Why am I getting the exact same MarkDuplicates results when passing a query or coordinate sorted bam?
picard bwa
updated 3 months ago by 153k • written 3 months ago by ▴ 890
0
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1
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1.0k
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Comment: Comment: How to preserve full FASTQ header through alignment and CRAM recovery
3 months ago by curious ▴ 890
4
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5
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1.0k
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How to preserve full FASTQ header through alignment and CRAM recovery
bam fastq cram
updated 3 months ago by 153k • written 3 months ago by ▴ 890
0
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1
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1.4k
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Comment: Comment: How common is it to split fastq files prior to bwa mem to increase parallelizati
4 months ago by curious ▴ 890
0
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0
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1.4k
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Comment: Comment: How common is it to split fastq files prior to bwa mem to increase parallelizati
4 months ago by curious ▴ 890
9
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11
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1.4k
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How common is it to split fastq files prior to bwa mem to increase parallelization?
mem bwa alignment
updated 3 months ago by 4.7k • written 4 months ago by ▴ 890
2
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1
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1.4k
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Comment: Comment: How common is it to split fastq files prior to bwa mem to increase parallelizati
4 months ago by curious ▴ 890
0
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2
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925
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What do the transcript variant # mean in RefSeq?
refseq
updated 16 months ago by 45k • written 16 months ago by ▴ 890
0
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0
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674
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Comment: Comment: How to convert Haps file to vcf file?
16 months ago by curious ▴ 890
0
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5
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1.9k
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Easy way to find out which allele is minor allele from bed file?
plink
updated 16 months ago by 11k • written 16 months ago by ▴ 890
0
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0
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1.9k
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Comment: Comment: Easy way to find out which allele is minor allele from bed file?
16 months ago by curious ▴ 890
0
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1
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1.9k
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Comment: Comment: Easy way to find out which allele is minor allele from bed file?
16 months ago by curious ▴ 890
0
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0
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801
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Comment: Comment: Can't figure out plink --sample-diff
17 months ago by curious ▴ 890
0
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2
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801
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Can't figure out plink --sample-diff
plink
17 months ago by curious ▴ 890
0
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0
replies
965
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Comment: Comment: Why do these two variants appear to result in the same amino acid change when an
19 months ago by curious ▴ 890
3
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2
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965
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Why do these two variants appear to result in the same amino acid change when annotated by snpeff, but are annotated differently in clinvar
clinvar
19 months ago by curious ▴ 890
1
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1
reply
727
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Is there a way to map Medgen # to OMIM # programmatically?
medgen omim
updated 20 months ago by 166k • written 20 months ago by ▴ 890
0
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1
reply
1.2k
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Where do these snpeff annotation come from?
snpeff
updated 21 months ago by 103k • written 21 months ago by ▴ 890
0
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4
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2.0k
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Is there a way to get a list of all homogygous sites for each sample with plink (regardless if they are in a run)
plink
updated 24 months ago by 11k • written 2.0 years ago by ▴ 890
0
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1
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2.0k
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Comment: Comment: Is there a way to get a list of all homogygous sites for each sample with plink
2.0 years ago by curious ▴ 890
1
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1
reply
806
views
bcftools update ID keeping only string after ';'
bcftools
updated 2.1 years ago by 166k • written 2.1 years ago by ▴ 890
0
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1
reply
1.3k
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Comment: Comment: Is this a valid allele in a vcf?
2.1 years ago by curious ▴ 890
0
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1
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1.3k
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Comment: Comment: Is this a valid allele in a vcf?
2.1 years ago by curious ▴ 890
0
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5
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1.3k
views
Is this a valid allele in a vcf?
vcf
updated 2.1 years ago by 45k • written 2.1 years ago by ▴ 890
0
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1
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1.4k
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Comment: Comment: Is it possible to interpret HGVS without transcript version number?
2.1 years ago by curious ▴ 890
0
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1
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1.4k
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Comment: Comment: Is it possible to interpret HGVS without transcript version number?
2.1 years ago by curious ▴ 890
0
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0
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793
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Comment: Comment: jannovar download problem
2.1 years ago by curious ▴ 890
0
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6
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1.4k
views
Is it possible to interpret HGVS without transcript version number?
hgvs
updated 2.1 years ago by ★ 1.3k • written 2.1 years ago by ▴ 890
0
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2
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793
views
jannovar download problem
jannovar
2.1 years ago by curious ▴ 890
0
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0
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1.0k
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Comment: Comment: Why does this stop gained result in a longer protein than the canonical version
2.2 years ago by curious ▴ 890
2
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2
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1.0k
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Why does this stop gained result in a longer protein than the canonical version
ensembl
updated 2.2 years ago by 45k • written 2.2 years ago by ▴ 890
2
votes
2
replies
3.4k
views
Download VCF for dbsnp 156?
dbsnp
updated 2.2 years ago by 153k • written 2.2 years ago by ▴ 890
0
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1
reply
779
views
Any way to get bcftools to query up to but not including the last site given in a region query
bcftools
updated 2.2 years ago by 166k • written 2.2 years ago by ▴ 890
4
votes
3
replies
2.3k
views
What does canonical transcript mean in the context of VEP
vep
updated 2.3 years ago by 4.8k • written 2.3 years ago by ▴ 890
0
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0
replies
915
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Comment: Comment: How to check the imputation quality of genotyping files?
2.4 years ago by curious ▴ 890
0
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0
replies
1.6k
views
Comment: Comment: Low SNP Overlap with Michigan 1KG and TopMed reference panel
2.4 years ago by curious ▴ 890
0
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0
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1.4k
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Comment: Comment: viewing hgvs in genome data viewer
2.4 years ago by curious ▴ 890
0
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1
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1.4k
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Comment: Comment: viewing hgvs in genome data viewer
2.4 years ago by curious ▴ 890
1
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4
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1.4k
views
viewing hgvs in genome data viewer
ncbi hgvs clinvar
2.4 years ago by curious ▴ 890
0
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0
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596
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Trying to understand the difference between between these two HGVS
hgvs
2.6 years ago by curious ▴ 890
2
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2
replies
1.3k
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drop duplicate insertion deletions in VCF at same position while keeping one
bcftools
2.6 years ago by curious ▴ 890
0
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0
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1.3k
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Comment: Comment: drop duplicate insertion deletions in VCF at same position while keeping one
2.6 years ago by curious ▴ 890
2
votes
1
reply
1.4k
views
In GWAS what is the point of regressing a quantitative phenotype on covariates first and taking the residuals?
gwas
updated 2.7 years ago by 5.1k • written 2.7 years ago by ▴ 890
1
vote
1
reply
853
views
calculating the allele frequency of a gene deletion and duplication
cnv
updated 2.7 years ago by ★ 3.0k • written 2.7 years ago by ▴ 890
5
votes
11
replies
4.1k
views
fast way to get last position in a large indexed VCF?
bcftools
updated 3.0 years ago by 103k • written 3.0 years ago by ▴ 890
0
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1
reply
4.1k
views
Comment: Comment: fast way to get last position in a large indexed VCF?
3.0 years ago by curious ▴ 890
311 results • Page 1 of 7
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