Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
2.8k
views
Comment: C: Differential-expression analysis using logistic regression in Seurat - glm.fit w
5.9 years ago by Lucy ▴ 170
1
vote
2
replies
2.8k
views
Differential-expression analysis using logistic regression in Seurat - glm.fit warning message
scRNA-seq Seurat Differential-expression analysis
updated 5.9 years ago by ★ 19k • written 5.9 years ago by ▴ 170
0
votes
0
replies
4.3k
views
Answer: A: Does Harmony batch correction for scRNA-seq require the same populations to be p
5.9 years ago by Lucy ▴ 170
1
vote
3
replies
4.3k
views
Does Harmony batch correction for scRNA-seq require the same populations to be present in all samples?
Harmony single-cell scRNA-seq batch-effect
updated 17 months ago by 45k • written 5.9 years ago by ▴ 170
7
votes
2
replies
3.1k
views
Clustering resolution single-cell RNA-seq
scRNA-seq RNA-seq clustering single-cell
updated 23 months ago by ▴ 260 • written 5.9 years ago by ▴ 170
0
votes
0
replies
2.4k
views
Downsampling reads vs. Seurat normalisation
RNA-Seq scRNA-seq DropletUtils single-cell
5.9 years ago by Lucy ▴ 170
0
votes
0
replies
9.3k
views
Comment: C: Harmony batch correction vs. regressing out donor effect in Seurat
5.9 years ago by Lucy ▴ 170
0
votes
1
reply
9.3k
views
Comment: C: Harmony batch correction vs. regressing out donor effect in Seurat
5.9 years ago by Lucy ▴ 170
10
votes
10
replies
9.3k
views
Harmony batch correction vs. regressing out donor effect in Seurat
Seurat scRNA-seq Harmony RNA-seq batch-effect
updated 17 months ago by 45k • written 5.9 years ago by ▴ 170
0
votes
0
replies
1.8k
views
Comment: C: ATAC-seq transcription factor binding prediction
5.9 years ago by Lucy ▴ 170
0
votes
0
replies
1.4k
views
Should batch correction be performed before or after feature selection in scRNA-seq
batch-effect scRNA-seq feature-selection
updated 17 months ago by 45k • written 6.3 years ago by ▴ 170
0
votes
4
replies
1.8k
views
ATAC-seq transcription factor binding prediction
ATAC-seq RNA-seq transcription factor
updated 6.6 years ago by • 0 • written 6.9 years ago by ▴ 170
2
votes
1
reply
3.5k
views
Homer annotatePeaks.pl custom GTF
Homer ATAC-seq GTF
6.7 years ago by Lucy ▴ 170
0
votes
1
reply
3.1k
views
Comment: C: Aligning RNA-seq and ATAC-seq gene annotations
6.7 years ago by Lucy ▴ 170
0
votes
4
replies
3.1k
views
Aligning RNA-seq and ATAC-seq gene annotations
Homer RNA-seq ATAC-seq Gene annotation
6.7 years ago by Lucy ▴ 170
0
votes
0
replies
20k
views
Comment: C: FRIP score ATAC-seq
6.7 years ago by Lucy ▴ 170
0
votes
0
replies
1.0k
views
CENTIPEDE - values from fitCentipede
centipede R ATAC-seq
updated 6.8 years ago by 20 • written 6.9 years ago by ▴ 170
0
votes
0
replies
4.6k
views
Comment: A: HOMER de novo motif enrichment
6.8 years ago by Lucy ▴ 170
0
votes
2
replies
4.6k
views
HOMER de novo motif enrichment
HOMER Motif enrichment
6.8 years ago by Lucy ▴ 170
0
votes
0
replies
888
views
Error with fitCentipede
Centipede R
6.9 years ago by Lucy ▴ 170
0
votes
0
replies
1.9k
views
featureCounts - how to make ATAC-seq cut-sites BAM
featureCounts bed
updated 2.5 years ago by 45k • written 7.0 years ago by ▴ 170
0
votes
0
replies
2.7k
views
Comment: C: featureCounts allowMultiOverlap - fractional or not?
7.0 years ago by Lucy ▴ 170
0
votes
0
replies
2.2k
views
Comment: C: When using MACS2 with -f BAM, it is possible to have a shift other than 0?
7.0 years ago by Lucy ▴ 170
0
votes
2
replies
2.7k
views
featureCounts allowMultiOverlap - fractional or not?
featureCounts ATAC-seq
7.0 years ago by Lucy ▴ 170
0
votes
4
replies
2.2k
views
When using MACS2 with -f BAM, it is possible to have a shift other than 0?
macs2 macs
updated 7.0 years ago by 20 • written 7.1 years ago by ▴ 170
20
votes
12
replies
20k
views
FRIP score ATAC-seq
ATAC-seq FRIP
updated 7.0 years ago by ▴ 30 • written 7.0 years ago by ▴ 170
0
votes
1
reply
3.1k
views
Comment: C: Determine peak summits after IDR analysis
7.0 years ago by Lucy ▴ 170
3
votes
4
replies
3.1k
views
Determine peak summits after IDR analysis
macs2 idr peak summits
updated 7.0 years ago by 36k • written 7.0 years ago by ▴ 170
0
votes
0
replies
3.1k
views
Comment: C: Determine peak summits after IDR analysis
7.0 years ago by Lucy ▴ 170
0
votes
1
reply
2.2k
views
Comment: C: When using MACS2 with -f BAM, it is possible to have a shift other than 0?
7.0 years ago by Lucy ▴ 170
0
votes
0
replies
42k
views
Comment: C: ATAC-seq peak calling with MACS
7.1 years ago by Lucy ▴ 170
0
votes
1
reply
2.3k
views
Comment: C: shift direction in ATAC/DNase data?
7.1 years ago by Lucy ▴ 170
0
votes
1
reply
1.4k
views
Should --very-sensitive be combined with -no-1mm-upfront?
bowtie2 bowtie
updated 7.1 years ago by 105k • written 7.1 years ago by ▴ 170
83 results • Page 2 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6