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benchmarking/validation tools for CNVs
CNV validation benchmarking truth set
updated 3.8 years ago by ★ 2.9k • written 7.0 years ago by ▴ 70
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0
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7.6k
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Answer: A: Oncofuse: Prediction Of Driver Gene Fusions From Ngs Data
updated 4.3 years ago by 43k • written 7.4 years ago by ▴ 70
0
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1
reply
2.8k
views
Comment: A: CONTRA ERRORS (need urgent help!!!)
updated 4.4 years ago by 43k • written 8.7 years ago by ▴ 70
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0
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2.8k
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Comment: C: CONTRA ERRORS (need urgent help!!!)
updated 4.4 years ago by 43k • written 8.7 years ago by ▴ 70
1
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5
replies
2.7k
views
How to create dummy VCF with fusion variants
fusions mitelman fusion databases
updated 6.1 years ago by ★ 2.9k • written 6.1 years ago by ▴ 70
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0
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2.7k
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Comment: C: How to create dummy VCF with fusion variants
6.1 years ago by Jackie ▴ 70
0
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1
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2.7k
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Comment: C: How to create dummy VCF with fusion variants
6.1 years ago by Jackie ▴ 70
0
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1
reply
1.9k
views
Comment: A: Does Cufflinks report chimeric transcripts/fusion genes?
6.2 years ago by Jackie ▴ 70
0
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5
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1.9k
views
Does Cufflinks report chimeric transcripts/fusion genes?
Cufflinks chimeric transcripts fusions
6.2 years ago by Jackie ▴ 70
0
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1
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1.9k
views
Comment: A: Does Cufflinks report chimeric transcripts/fusion genes?
6.2 years ago by Jackie ▴ 70
2
votes
2
replies
3.0k
views
How to map NCBI contig positions to chromosome positions
NCBI ribosomal contig GRCh37.13
updated 6.2 years ago by ▴ 190 • written 7.2 years ago by ▴ 70
1
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5
replies
2.8k
views
CONTRA ERRORS (need urgent help!!!)
software-error
updated 18 months ago by 43k • written 8.7 years ago by ▴ 70
0
votes
0
replies
1.7k
views
How to download all the VCFs generated from WXS BAM in TCGA legacy archive?
TCGA WXS VCFs
6.6 years ago by Jackie ▴ 70
0
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1
reply
3.8k
views
Comment: C: How to extract all the simple repeats from the hg19 reference genome
6.7 years ago by Jackie ▴ 70
5
votes
8
replies
3.8k
views
How to extract all the simple repeats from the hg19 reference genome
simple repeats reference genome
updated 6.7 years ago by 35k • written 6.7 years ago by ▴ 70
0
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2
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3.8k
views
Comment: C: How to extract all the simple repeats from the hg19 reference genome
6.7 years ago by Jackie ▴ 70
0
votes
0
replies
1.8k
views
CNV tools for hybridization vs. amplicon capture WES data
amplicon CNV hybridization
updated 13 months ago by 43k • written 7.0 years ago by ▴ 70
2
votes
1
reply
2.6k
views
Questions about the splitting/spannings reads reported by manta
RNA-Seq manta splitting reads spanning reads
updated 7.1 years ago by ▴ 180 • written 7.3 years ago by ▴ 70
3
votes
2
replies
1.9k
views
Difference between the two models in manta
manta RNA-Seq
updated 7.1 years ago by ▴ 180 • written 7.3 years ago by ▴ 70
0
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1
reply
1.5k
views
Comment: A: GT tag in VCF spec
7.1 years ago by Jackie ▴ 70
4
votes
3
replies
1.5k
views
GT tag in VCF spec
GT VCF tags valid
7.1 years ago by Jackie ▴ 70
0
votes
1
reply
2.1k
views
What does 'frac' mean in cufflinks output transcripts.gtf
cufflinkts fpkm frac
7.2 years ago by Jackie ▴ 70
0
votes
2
replies
2.1k
views
How to output a pdf with both tables and plots using perl
perl PDF:Table Plot Histogram
updated 7.2 years ago by 8.4k • written 7.2 years ago by ▴ 70
2
votes
2
replies
2.8k
views
Use Bowtie to trim reads in fastq files
bowite trim
updated 7.2 years ago by 20k • written 7.2 years ago by ▴ 70
1
vote
1
reply
3.2k
views
How to align reads using bowtie against multiple customized reference files
bowtie
7.3 years ago by Jackie ▴ 70
0
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0
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6.0k
views
Comment: C: Alignment stats summary by STAR aligner, please help!
7.3 years ago by Jackie ▴ 70
6
votes
6
replies
6.0k
views
Alignment stats summary by STAR aligner, please help!
STAR RNA-seq QC alignment
7.3 years ago by Jackie ▴ 70
0
votes
1
reply
1.8k
views
Tophat-fusion-post running errors
tophat-fusion-post python error bowtie
7.4 years ago by Jackie ▴ 70
0
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0
replies
1.8k
views
Answer: A: Tophat-fusion-post running errors
7.4 years ago by Jackie ▴ 70
0
votes
2
replies
2.6k
views
copyCat error (copyCat2)
copyCat copyCat2 WES CNV
updated 20 months ago by 43k • written 8.4 years ago by ▴ 70
0
votes
0
replies
1.8k
views
Pindel vcf tag HOMLEN?
Pindel vcf HOMLEN HRun Homopolymer run
updated 7.6 years ago by 20 • written 7.7 years ago by ▴ 70
0
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1
reply
1.1k
views
Comment: A: Tophat chromosome position greater than chromosome size
7.7 years ago by Jackie ▴ 70
0
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3
replies
1.1k
views
Tophat chromosome position greater than chromosome size
RNA-Seq tophat paired-end
7.7 years ago by Jackie ▴ 70
0
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0
replies
2.6k
views
Comment: C: copyCat error (copyCat2)
8.4 years ago by Jackie ▴ 70
1
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0
replies
4.5k
views
Comment: C: How to interpret this CNV results
8.6 years ago by Jackie ▴ 70
3
votes
2
replies
4.5k
views
How to interpret this CNV results
SNP6.0 CNV Affymetrix
updated 19 months ago by 43k • written 8.6 years ago by ▴ 70
0
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1
reply
3.0k
views
Comment: C: tophat-fusion for gene fusion detection
8.9 years ago by Jackie ▴ 70
0
votes
2
replies
3.0k
views
tophat-fusion for gene fusion detection
alignment RNA-seq sequence
updated 15 months ago by 43k • written 8.9 years ago by ▴ 70
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