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2
votes
2
replies
690
views
Looking for a simple tool to match 6-mers (such as TGATCA) to motifs
motif.
updated 2.8 years ago by 166k • written 2.8 years ago by ▴ 80
0
votes
0
replies
512
views
Identify each segment and breakpoints in segmental duplication
duplication segmental dotplot
2.9 years ago by changxu.fan ▴ 80
0
votes
1
reply
1.1k
views
Comment: Comment: homer annotatePeaks.pl: is it possible to adjust the threshold for motif scan?
3.1 years ago by changxu.fan ▴ 80
1
vote
3
replies
1.1k
views
homer annotatePeaks.pl: is it possible to adjust the threshold for motif scan?
homer
updated 3.1 years ago by ★ 1.9k • written 3.1 years ago by ▴ 80
1
vote
0
replies
464
views
An IGV track type to display numerical data and categorical data simultaneously
igv
3.2 years ago by changxu.fan ▴ 80
0
votes
1
reply
1.1k
views
Comment: Comment: Looking for a tool to test for positive selection in enhancer
3.3 years ago by changxu.fan ▴ 80
0
votes
3
replies
1.1k
views
Looking for a tool to test for positive selection in enhancer
positive selection
updated 3.3 years ago by ▴ 570 • written 3.3 years ago by ▴ 80
0
votes
1
reply
2.3k
views
Comment: Comment: How to interpret the log-likelihood values of phyml results?
3.3 years ago by changxu.fan ▴ 80
3
votes
3
replies
2.3k
views
How to interpret the log-likelihood values of phyml results?
phyml
updated 3.3 years ago by ★ 29k • written 3.3 years ago by ▴ 80
0
votes
0
replies
646
views
Best tools for calling structural variants from 2 assemblies?
genetics variants genomics comparative population evolution
3.8 years ago by changxu.fan ▴ 80
0
votes
0
replies
2.8k
views
Comment: Comment: How to change the track background color of IGV
3.9 years ago by changxu.fan ▴ 80
0
votes
2
replies
2.8k
views
How to change the track background color of IGV
IGV
3.9 years ago by changxu.fan ▴ 80
1
vote
1
reply
1.1k
views
Best current tool for deconvolution of bulk sample
cibersort
updated 3.9 years ago by ▴ 250 • written 4.0 years ago by ▴ 80
0
votes
0
replies
566
views
Looking for a table of gene expression from Encode RNA-seq experiments
encode
4.1 years ago by changxu.fan ▴ 80
1
vote
2
replies
2.8k
views
how to get total number of reads in a IGV view
igv
updated 4.2 years ago by 152k • written 4.2 years ago by ▴ 80
0
votes
0
replies
2.7k
views
Comment: C: How to use Rsamtools to extracting reads map into single chromosome from BAM fil
4.4 years ago by changxu.fan ▴ 80
16
votes
14
replies
8.6k
views
How to change cellranger multimapping algorithm
RNA-Seq
updated 4.5 years ago by ★ 2.1k • written 6.5 years ago by ▴ 80
0
votes
0
replies
742
views
Looking for a fast way to visualize the same region of many Hi-C datasets together
Hi-C juicer juicebox
4.7 years ago by changxu.fan ▴ 80
0
votes
0
replies
717
views
The best pacakge to annotate a set of regions
annotate R cage
4.7 years ago by changxu.fan ▴ 80
2
votes
1
reply
1.4k
views
recommendation needed: scRNA-seq batch effect correction methods that can be used for differential expression
single-cell RNA-Seq batch-effect
updated 15 months ago by 45k • written 4.9 years ago by ▴ 80
2
votes
1
reply
1.0k
views
Looking for an annotation-aware sequence alignment visualization tool
alignment genome jalview
updated 4.9 years ago by ▴ 220 • written 4.9 years ago by ▴ 80
0
votes
1
reply
945
views
How to customize the attibutes of geo datasets?
ncbi geo
updated 5.5 years ago by ▴ 40 • written 5.5 years ago by ▴ 80
0
votes
0
replies
8.6k
views
Comment: C: How to change cellranger multimapping algorithm
6.4 years ago by changxu.fan ▴ 80
0
votes
1
reply
8.6k
views
Comment: C: How to change cellranger multimapping algorithm
6.4 years ago by changxu.fan ▴ 80
0
votes
1
reply
8.6k
views
Comment: C: How to change cellranger multimapping algorithm
6.4 years ago by changxu.fan ▴ 80
2
votes
0
replies
8.6k
views
Comment: C: How to change cellranger multimapping algorithm
6.5 years ago by changxu.fan ▴ 80
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