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17
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8
replies
43k
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How to read vcf file in python?
vcf reader python
updated 2.6 years ago by ▴ 90 • written 5.7 years ago by ▴ 30
2
votes
5
replies
1.7k
views
How to convert fastq to BAM
fastq bam
updated 3.4 years ago by ★ 4.3k • written 3.4 years ago by ▴ 30
0
votes
1
reply
1.8k
views
Comment: Comment: CNV - Copy number variations. Which tool is most used for?
3.5 years ago by ja4123 ▴ 30
0
votes
1
reply
1.8k
views
Comment: Comment: CNV - Copy number variations. Which tool is most used for?
3.5 years ago by ja4123 ▴ 30
0
votes
1
reply
1.8k
views
Comment: Comment: CNV - Copy number variations. Which tool is most used for?
3.5 years ago by ja4123 ▴ 30
4
votes
7
replies
1.8k
views
CNV - Copy number variations. Which tool is most used for?
number variations CNV Copy
updated 3.5 years ago by 89k • written 3.5 years ago by ▴ 30
0
votes
0
replies
1.6k
views
Comment: Comment: Trimmomatic usage based on input data
3.5 years ago by ja4123 ▴ 30
0
votes
1
reply
1.6k
views
Comment: Comment: Trimmomatic usage based on input data
3.5 years ago by ja4123 ▴ 30
0
votes
1
reply
1.6k
views
Comment: Comment: Trimmomatic usage based on input data
3.5 years ago by ja4123 ▴ 30
0
votes
1
reply
1.6k
views
Comment: Comment: Trimmomatic usage based on input data
3.5 years ago by ja4123 ▴ 30
0
votes
0
replies
5.0k
views
Comment: Comment: Bowtie2 and Hisat2 which tool should I use?
3.5 years ago by ja4123 ▴ 30
10
votes
2
replies
5.0k
views
Bowtie2 and Hisat2 which tool should I use?
alignment Bowtie2 Hisat2
3.5 years ago by ja4123 ▴ 30
4
votes
7
replies
1.6k
views
Trimmomatic usage based on input data
Trimmomatic filtering
updated 3.5 years ago by 154k • written 3.5 years ago by ▴ 30
6
votes
4
replies
1.4k
views
Can someone could recommend some article (code and files included) related to alcoholic disease on any grounds?
alcoholic tumor
updated 3.5 years ago by ★ 30k • written 3.5 years ago by ▴ 30
0
votes
1
reply
1.4k
views
Comment: Comment: Can someone could recommend some article (code and files included) related to a
3.5 years ago by ja4123 ▴ 30
1
vote
2
replies
1.5k
views
How to calculate LogFC? [gene expression matrix]?
gene expression LogFC
updated 3.6 years ago by 89k • written 3.6 years ago by ▴ 30
0
votes
0
replies
3.9k
views
Comment: Comment: How to count gene expression level in R?
4.1 years ago by ja4123 ▴ 30
0
votes
1
reply
3.9k
views
Comment: Comment: How to count gene expression level in R?
4.1 years ago by ja4123 ▴ 30
0
votes
1
reply
3.9k
views
Comment: Comment: How to count gene expression level in R?
4.1 years ago by ja4123 ▴ 30
0
votes
0
replies
3.9k
views
Comment: Comment: How to count gene expression level in R?
4.1 years ago by ja4123 ▴ 30
0
votes
0
replies
3.9k
views
Comment: Comment: How to count gene expression level in R?
4.1 years ago by ja4123 ▴ 30
0
votes
1
reply
3.9k
views
Comment: Comment: How to count gene expression level in R?
4.1 years ago by ja4123 ▴ 30
1
vote
1
reply
3.9k
views
Comment: Comment: How to count gene expression level in R?
4.1 years ago by ja4123 ▴ 30
7
votes
14
replies
3.9k
views
How to count gene expression level in R?
expression seurat r gene bioconductor
4.1 years ago by ja4123 ▴ 30
4
votes
2
replies
1.4k
views
scRNA-seq data analysis - R
scRNA-seq R
updated 4.1 years ago by 89k • written 4.1 years ago by ▴ 30
0
votes
0
replies
1.3k
views
Comment: Comment: Snakefile - problem with too many outputs
4.3 years ago by ja4123 ▴ 30
0
votes
3
replies
1.3k
views
Snakefile - problem with too many outputs
snakemake snakefile
updated 4.3 years ago by ★ 1.5k • written 4.3 years ago by ▴ 30
0
votes
0
replies
749
views
Flexibility of protein (ProtParam module from biopython)
biopython Flexibility
4.3 years ago by ja4123 ▴ 30
0
votes
0
replies
3.0k
views
Comment: Comment: How to extract information about which chromosome it is, from bam file using pys
4.3 years ago by ja4123 ▴ 30
0
votes
2
replies
3.0k
views
Comment: Comment: How to extract information about which chromosome it is, from bam file using pys
4.3 years ago by ja4123 ▴ 30
0
votes
0
replies
3.0k
views
Comment: Comment: How to extract information about which chromosome it is, from bam file using pys
4.3 years ago by ja4123 ▴ 30
2
votes
6
replies
3.0k
views
How to extract information about which chromosome it is, from bam file using pysam?
pysam bam
updated 4.3 years ago by 21k • written 4.3 years ago by ▴ 30
0
votes
1
reply
1.9k
views
Comment: Comment: How to download via biopython (proteom or genome) individual or random organisms
4.5 years ago by ja4123 ▴ 30
0
votes
1
reply
1.9k
views
Comment: Comment: How to download via biopython (proteom or genome) individual or random organisms
4.5 years ago by ja4123 ▴ 30
0
votes
1
reply
1.9k
views
Comment: Comment: How to download via biopython (proteom or genome) individual or random organisms
4.5 years ago by ja4123 ▴ 30
3
votes
7
replies
1.9k
views
How to download via biopython (proteom or genome) individual or random organisms?
genom proteom
updated 4.5 years ago by 154k • written 4.5 years ago by ▴ 30
0
votes
0
replies
2.2k
views
Comment: C: bedtools intersect usage problem
4.7 years ago by ja4123 ▴ 30
0
votes
1
reply
2.2k
views
Comment: C: bedtools intersect usage problem
4.7 years ago by ja4123 ▴ 30
0
votes
1
reply
2.2k
views
Comment: C: bedtools intersect usage problem
4.7 years ago by ja4123 ▴ 30
5
votes
7
replies
2.2k
views
bedtools intersect usage problem
bedtools intersect bam
updated 4.7 years ago by 22k • written 4.7 years ago by ▴ 30
1
vote
1
reply
1.5k
views
Files for CHIPseeker analysis
chipseeker chip-seq r
4.7 years ago by ja4123 ▴ 30
1
vote
1
reply
1.1k
views
Location of the peaks from CHIP-seq data in the genome
CHIP-seq macs3 bed narrowPeak
4.7 years ago by ja4123 ▴ 30
8
votes
1
reply
5.8k
views
How to convert vcf.bgz to vcf.gz?
vcf gz bgz gnomad
updated 4.9 years ago by 20 • written 5.7 years ago by ▴ 30
0
votes
1
reply
2.1k
views
Comment: C: Problem succesfully running freebayes
5.7 years ago by ja4123 ▴ 30
2
votes
8
replies
2.1k
views
Problem succesfully running freebayes
freebayes vcf fasta
5.7 years ago by ja4123 ▴ 30
0
votes
0
replies
2.1k
views
Comment: C: Problem succesfully running freebayes
5.7 years ago by ja4123 ▴ 30
0
votes
0
replies
2.1k
views
Comment: C: Problem succesfully running freebayes
5.7 years ago by ja4123 ▴ 30
3
votes
1
reply
3.9k
views
File not suitable for fasta index generation.
fasta index freebayes
updated 5.7 years ago by 166k • written 5.7 years ago by ▴ 30
4
votes
5
replies
3.8k
views
Unable to find FASTA index entry for '1'
freebayes fasta vcf bam
5.7 years ago by ja4123 ▴ 30
0
votes
1
reply
6.7k
views
Comment: C: HISAT2 Error: Encountered internal HISAT2 exception (#1)
5.7 years ago by ja4123 ▴ 30
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