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492
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Merging Imputed VCF with Reference Panel VCF
VCF GLIMPSE Imputation
14 months ago by selplat21 ▴ 20
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0
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1.8k
views
Comment: Comment: Plotting LD heat map with plink.ld result
15 months ago by selplat21 ▴ 20
2
votes
2
replies
1.8k
views
Plotting LD heat map with plink.ld result
R
15 months ago by selplat21 ▴ 20
0
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1
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1.6k
views
Comment: Comment: Header too long for bam format
15 months ago by selplat21 ▴ 20
2
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3
replies
1.6k
views
Header too long for bam format
samtools alignments
updated 15 months ago by 45k • written 15 months ago by ▴ 20
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0
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1.6k
views
Comment: Comment: Download data from data dryad using CLI?
15 months ago by selplat21 ▴ 20
1
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3
replies
1.6k
views
Download data from data dryad using CLI?
datadryad
15 months ago by selplat21 ▴ 20
0
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1
reply
753
views
Comment: Comment: Bcftools consensus unexpected output
17 months ago by selplat21 ▴ 20
0
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3
replies
753
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Bcftools consensus unexpected output
Bcftools
updated 17 months ago by 45k • written 17 months ago by ▴ 20
0
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0
replies
603
views
Bcftools consensus when reference is a deletion
consensus vcf
24 months ago by selplat21 ▴ 20
0
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0
replies
576
views
Bcftools Consensus - Choose Random Allele for Heterozygous Sites
bcftools
updated 2.1 years ago by 45k • written 2.1 years ago by ▴ 20
0
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0
replies
598
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Sample based on allele frequency matching between two files
linkage
updated 2.5 years ago by 45k • written 2.5 years ago by ▴ 20
0
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0
replies
1.1k
views
Comment: Comment: Removing or Setting pairs to NA based on conditions in another data frame (R)
3.3 years ago by selplat21 ▴ 20
3
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2
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1.1k
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Removing or Setting pairs to NA based on conditions in another data frame (R)
R
3.3 years ago by selplat21 ▴ 20
2
votes
2
replies
1.2k
views
Set random genotypes to missing in VCF file by individuals and sites
imputation
3.3 years ago by selplat21 ▴ 20
0
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0
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1.2k
views
Comment: Comment: Set random genotypes to missing in VCF file by individuals and sites
3.3 years ago by selplat21 ▴ 20
1
vote
5
replies
1.7k
views
Convert rows to columns delimited by each SNP ID
vcf linux bimbam
updated 3.3 years ago by 154k • written 3.3 years ago by ▴ 20
1
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0
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1.7k
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Answer: Answer: Convert rows to columns delimited by each SNP ID
updated 3.3 years ago by 154k • written 3.3 years ago by ▴ 20
0
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0
replies
1.7k
views
Comment: Comment: Convert rows to columns delimited by each SNP ID
3.3 years ago by selplat21 ▴ 20
0
votes
0
replies
1.7k
views
Comment: Comment: Convert rows to columns delimited by each SNP ID
3.3 years ago by selplat21 ▴ 20
0
votes
1
reply
1.7k
views
Comment: Comment: Convert rows to columns delimited by each SNP ID
3.3 years ago by selplat21 ▴ 20
1
vote
2
replies
912
views
Extract Reads with Allele Type in IGV
Genomics alignment
updated 2.9 years ago by 45k • written 3.7 years ago by ▴ 20
0
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0
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912
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Comment: Comment: Extract Reads with Allele Type in IGV
3.7 years ago by selplat21 ▴ 20
0
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1
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1.2k
views
Comment: Comment: Add Chromosome Breaks and Labels to Continuous x-axis in R
3.8 years ago by selplat21 ▴ 20
1
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3
replies
1.2k
views
Add Chromosome Breaks and Labels to Continuous x-axis in R
R
updated 3.8 years ago by 12k • written 3.8 years ago by ▴ 20
0
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0
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1.2k
views
Comment: Comment: Loop for interval range based on chromosome sizes
3.9 years ago by selplat21 ▴ 20
2
votes
1
reply
865
views
Filter VCF file by list of sites.
vcf filtering genomics
updated 3.9 years ago by 166k • written 3.9 years ago by ▴ 20
0
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0
replies
1.2k
views
Comment: Comment: Loop for interval range based on chromosome sizes
3.9 years ago by selplat21 ▴ 20
0
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3
replies
1.2k
views
Loop for interval range based on chromosome sizes
chromosomes genomics
updated 2.8 years ago by 45k • written 3.9 years ago by ▴ 20
0
votes
0
replies
964
views
Modifying Genbank Contamination File for Bedtools
Genome-Assembly Linux
updated 4.3 years ago by 45k • written 4.3 years ago by ▴ 20
1
vote
1
reply
852
views
For loop to generate mean for each measurement by sex
R
updated 2.7 years ago by 45k • written 5.0 years ago by ▴ 20
0
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0
replies
1.6k
views
Comment: C: Linear Model Loop in R
5.0 years ago by selplat21 ▴ 20
1
vote
6
replies
1.6k
views
Linear Model Loop in R
R
updated 2.5 years ago by 45k • written 5.0 years ago by ▴ 20
0
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0
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1.6k
views
Comment: C: Linear Model Loop in R
5.0 years ago by selplat21 ▴ 20
0
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0
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1.6k
views
Comment: C: Linear Model Loop in R
5.0 years ago by selplat21 ▴ 20
1
vote
1
reply
1.1k
views
Imputation on low coverage samples
next-gen popgen imputation sequencing
5.0 years ago by selplat21 ▴ 20
1
vote
3
replies
1.3k
views
Summing Chromosome Sizes
R sequencing
updated 5.1 years ago by 13k • written 5.1 years ago by ▴ 20
0
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0
replies
1.3k
views
Comment: C: Summing Chromosome Sizes
5.1 years ago by selplat21 ▴ 20
0
votes
0
replies
1.6k
views
RepeatModeler - Everything works except LTR Harvest
assembly genome next-gen sequencing
5.1 years ago by selplat21 ▴ 20
0
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0
replies
1.4k
views
Comment: C: Making disjoint chromosomal sites contiguous with awk
5.1 years ago by selplat21 ▴ 20
0
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1
reply
1.4k
views
Comment: C: Making disjoint chromosomal sites contiguous with awk
5.1 years ago by selplat21 ▴ 20
0
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1
reply
1.4k
views
Comment: A: Making disjoint chromosomal sites contiguous with awk
5.1 years ago by selplat21 ▴ 20
0
votes
5
replies
1.4k
views
Making disjoint chromosomal sites contiguous with awk
awk assembly bash sequence
updated 2.5 years ago by 45k • written 5.1 years ago by ▴ 20
1
vote
9
replies
3.6k
views
Concatenation and Gzip Compression of Beagle Files Slow
sequencing next-gen unix bash
updated 5.2 years ago by 20 • written 5.3 years ago by ▴ 20
0
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1
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3.6k
views
Comment: C: Concatenation and Gzip Compression of Beagle Files Slow
5.3 years ago by selplat21 ▴ 20
0
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1
reply
3.6k
views
Comment: C: Concatenation and Gzip Compression of Beagle Files Slow
5.3 years ago by selplat21 ▴ 20
0
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1
reply
3.6k
views
Comment: C: Concatenation and Gzip Compression of Beagle Files Slow
5.3 years ago by selplat21 ▴ 20
1
vote
6
replies
1.7k
views
Print based on character strings
R Command Line Unix
5.3 years ago by selplat21 ▴ 20
0
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1
reply
1.7k
views
Comment: A: Print based on character strings
5.3 years ago by selplat21 ▴ 20
0
votes
1
reply
1.7k
views
Comment: C: Print based on character strings
5.3 years ago by selplat21 ▴ 20
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