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questions
1
vote
18
replies
3.2k
views
VarScan.v2.4.3 generating incomplete or partial VCF file
SNP
variant calling
exomeSeq
varscan
updated 4.8 years ago by
2nelly
▴ 310 • written 4.8 years ago by
Sandeep
▴ 260
0
votes
1
reply
1.4k
views
Are there any tools that can extract somatic variants from matched normal tumor vcf files?
DNA-seq
variant calling
ngs
updated 4.8 years ago by
Kevin Blighe
87k • written 4.8 years ago by
Sandeep
▴ 260
3
votes
10
replies
2.3k
views
GTF file for Bombyx Mori
miRNA
small RNA
bombyx mori
smallrna seq
updated 5.9 years ago by
Carambakaracho
★ 3.2k • written 5.9 years ago by
Sandeep
▴ 260
2
votes
7
replies
3.2k
views
CNV analysis for targeted genomic region
CNV
updated 10 months ago by
Ram
43k • written 8.1 years ago by
Sandeep
▴ 260
2
votes
10
replies
4.0k
views
Align short reads to large multi reference genome
bowtie
ebwtl
updated 17 months ago by
Ram
43k • written 8.8 years ago by
Sandeep
▴ 260
17
votes
5
replies
6.0k
views
Which Tool Is Used To Plot The Ideogram Shown Here?
updated 8.6 years ago by
Biostar
20 • written 11.0 years ago by
Sandeep
▴ 260
3
votes
6
replies
2.4k
views
Why is the scaling factor always million while dealing with RNA-Seq expression?
RPKM
TPM
FPKM
RNA-Seq
CPM
updated 19 months ago by
Ram
43k • written 8.6 years ago by
Sandeep
▴ 260
9
votes
7
replies
3.6k
views
Interpretation of REF and ALT columns of GATK generated VCF file
vcf
gatk
updated 22 months ago by
Ram
43k • written 9.1 years ago by
Sandeep
▴ 260
3
votes
3
replies
3.7k
views
Linc and miRNA in GTF file
GTF
lincRNA
miRNA
lncRNA
updated 14 months ago by
Ram
43k • written 9.0 years ago by
Sandeep
▴ 260
3
votes
4
replies
3.3k
views
Extract read count for specific allele from a GATK VCF file
read-count
VCF
gatk
allele
updated 22 months ago by
Ram
43k • written 9.1 years ago by
Sandeep
▴ 260
0
votes
2
replies
1.5k
views
Search of a public dataset
exome-sequencing
next-gen
updated 2.4 years ago by
Ram
43k • written 9.7 years ago by
Sandeep
▴ 260
3
votes
3
replies
5.1k
views
Align short reads to multiple reference sequence
bowtie
short-reads
shrimp
next-gen
mirna
updated 2.4 years ago by
Ram
43k • written 9.8 years ago by
Sandeep
▴ 260
13
votes
8
replies
3.4k
views
Calculate P-Values For Genomic Regions Using Sliding Window Method
array
11.0 years ago by
Sandeep
▴ 260
1
vote
2
replies
2.0k
views
Apply Hidden Markov Model (Hmm) On Tiling Array
microarray
array
updated 11.4 years ago by
Sean Davis
26k • written 11.4 years ago by
Sandeep
▴ 260
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