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Comment: Comment: how to extract unique variants from GVCF
11 months ago by Rashedul Islam ▴ 450
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739
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Answer: Answer: Divide the genome to vary lengths windows in R
21 months ago by Rashedul Islam ▴ 450
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1
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581
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Comment: Comment: adding gene symbol to bed file
21 months ago by Rashedul Islam ▴ 450
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687
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Comment: Comment: ChIP-seq correlation with CNS
22 months ago by Rashedul Islam ▴ 450
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7.2k
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Answer: Answer: How to work out Z score for heatmaps for RNA seq dataset
22 months ago by Rashedul Islam ▴ 450
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56k
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Answer: A: Extract fasta sequences from a file using a list in another file.
2.1 years ago by Rashedul Islam ▴ 450
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7.6k
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Comment: C: How do I extract Fasta Sequences based on a list of IDs?
2.1 years ago by Rashedul Islam ▴ 450
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560
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Comment: C: Contigs have different mutations than raw reads
2.4 years ago by Rashedul Islam ▴ 450
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2
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560
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Contigs have different mutations than raw reads
mutation-calling Assembly
updated 19 days ago by 38k • written 2.4 years ago by ▴ 450
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528
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Comment: C: Different assembler and difference in genomic variants. Is it possible?
2.5 years ago by Rashedul Islam ▴ 450
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4
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528
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Different assembler and difference in genomic variants. Is it possible?
Assembly
2.5 years ago by Rashedul Islam ▴ 450
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0
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528
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Comment: C: Different assembler and difference in genomic variants. Is it possible?
2.5 years ago by Rashedul Islam ▴ 450
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1
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979
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Answer: A: clusters generated by plotHeatmap of deeptools
2.6 years ago by Rashedul Islam ▴ 450
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1.0k
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Comment: C: Alternative splicing event annotations method
2.8 years ago by Rashedul Islam ▴ 450
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821
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Comment: C: Log2 fold change correlation for ChIP seq data - do I need a FDR cut off?
2.9 years ago by Rashedul Islam ▴ 450
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1
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1.0k
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from unmapped bam file picard samtofastq produced no output
RNA-Seq picard bedtools
updated 2.9 years ago by • 0 • written 3.0 years ago by ▴ 450
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1
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1.8k
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Answer: A: How to extract a fasta sequence from a batch of multiple fasta genome files
3.0 years ago by Rashedul Islam ▴ 450
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2.8k
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Comment: C: How to round the "expected counts" to integers?
3.0 years ago by Rashedul Islam ▴ 450
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0
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2.2k
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Comment: C: bedtools bamtofastq: Segmentation fault (core dumped)
3.0 years ago by Rashedul Islam ▴ 450
5
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3
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2.2k
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bedtools bamtofastq: Segmentation fault (core dumped)
bedtools bamtofastq bam RNA-seq
updated 3.0 years ago by 34k • written 3.0 years ago by ▴ 450
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1.8k
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Answer: A: what are the big questions in bioinformatics field nowadays
3.1 years ago by Rashedul Islam ▴ 450
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1.0k
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Comment: C: Alternative splicing event annotations method
3.1 years ago by Rashedul Islam ▴ 450
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3
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1.0k
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Alternative splicing event annotations method
MISO RNA-Seq
updated 3.1 years ago by 14k • written 3.1 years ago by ▴ 450
1
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0
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10k
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Answer: A: Match And Merge Information By Id In Two Files
updated 3.3 years ago by 38k • written 5.8 years ago by ▴ 450
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4.3k
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Answer: A: UCSC Viewer : Adjust all tracks on the same scale at the same time.
3.5 years ago by Rashedul Islam ▴ 450
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1
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1.3k
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Comment: C: Comparing values of a column if it falls between values of two columns of a diff
3.5 years ago by Rashedul Islam ▴ 450
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1
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699
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Answer: A: How to find which genes are missing?
3.5 years ago by Rashedul Islam ▴ 450
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0
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1.5k
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Answer: A: DNA-Methylation downstream analysis using deepTOOLS or bedops
3.5 years ago by Rashedul Islam ▴ 450
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0
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21k
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Answer: A: Where Can I Find Mutation Databases Specialized In Cancer?
3.5 years ago by Rashedul Islam ▴ 450
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0
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1.5k
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Comment: C: What does arrow+box mean in UCSC genome browser?
3.5 years ago by Rashedul Islam ▴ 450
4
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2
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1.5k
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What does arrow+box mean in UCSC genome browser?
alignment
updated 3.5 years ago by ▴ 620 • written 3.5 years ago by ▴ 450
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3.3k
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Comment: C: Reads and Read Segments in Alignment
3.7 years ago by Rashedul Islam ▴ 450
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1
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5.0k
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Comment: C: BLAST database with local sequences
3.8 years ago by Rashedul Islam ▴ 450
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0
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1.6k
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Comment: C: counting number of CpGs that are methylated and unmethylated in a read of whole
3.8 years ago by Rashedul Islam ▴ 450
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2
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1.6k
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Comment: C: counting number of CpGs that are methylated and unmethylated in a read of whole
3.8 years ago by Rashedul Islam ▴ 450
7
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6
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1.6k
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counting number of CpGs that are methylated and unmethylated in a read of whole genome bisulfite data
next-gen sequencing genome
updated 4 months ago by • 0 • written 3.8 years ago by ▴ 450
0
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1
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651
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Comment: C: How can I get the names of bams that were merged
3.9 years ago by Rashedul Islam ▴ 450
1
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3
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651
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How can I get the names of bams that were merged
alignment sequence
updated 3.9 years ago by 9.5k • written 3.9 years ago by ▴ 450
2
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1
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7.2k
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Answer: A: BWA mem error: [bwt_restore_sa] SA-BWT inconsistency: seq_len is not the same.
4.0 years ago by Rashedul Islam ▴ 450
5
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2
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11k
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Answer: Answer: Linux for loop for 2 inputs and 4 outputs for Trimmomatic fastq quality trimming
updated 5 months ago by 38k • written 7.6 years ago by ▴ 450
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1
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1.3k
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Comment: C: Enrichment Analysis in R
4.7 years ago by Rashedul Islam ▴ 450
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1
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1.3k
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Comment: C: ChromHMM segmenting only 1 chromosome
4.7 years ago by Rashedul Islam ▴ 450
2
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2.8k
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Answer: C: fastq-dump error for restricted data from dbGAP
4.7 years ago by Rashedul Islam ▴ 450
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0
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1.4k
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Answer: A: Can we compare peaks of different transcription factors when they were obtained
4.7 years ago by Rashedul Islam ▴ 450
1
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0
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1.8k
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Answer: A: GSEA top genes vs all platform
4.7 years ago by Rashedul Islam ▴ 450
1
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1
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7.6k
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Answer: A: How do I extract Fasta Sequences based on a list of IDs?
4.7 years ago by Rashedul Islam ▴ 450
0
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0
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2.8k
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Comment: C: fastq-dump error for restricted data from dbGAP
4.7 years ago by Rashedul Islam ▴ 450
0
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0
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1.6k
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Comment: C: ChipSeeker Heatmap (y-axis)?
4.7 years ago by Rashedul Islam ▴ 450
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0
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1.6k
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Answer: A: ChipSeeker Heatmap (y-axis)?
4.7 years ago by Rashedul Islam ▴ 450
2
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0
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3.8k
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Answer: A: obtaining unique peaks in DiffBind
4.7 years ago by Rashedul Islam ▴ 450
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