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2
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1
reply
501
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How to extract specific location in .bam files
bam
updated 2.4 years ago by 141k • written 2.4 years ago by ▴ 110
0
votes
1
reply
672
views
Is it correct to merge multiple gvcf from separate variant calling?
gatk
updated 2.5 years ago by 22k • written 2.5 years ago by ▴ 110
0
votes
0
replies
747
views
Comment: Comment: Wha does combineGVCFs does to loci with variant only in gVCF from another analys
2.5 years ago by optimistsso4co3 ▴ 110
0
votes
1
reply
747
views
Wha does combineGVCFs does to loci with variant only in gVCF from another analysis?
gatk
2.5 years ago by optimistsso4co3 ▴ 110
0
votes
1
reply
1.2k
views
Comment: Comment: What are "must have" data types one should extract from WGS .fq data?
2.5 years ago by optimistsso4co3 ▴ 110
0
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1
reply
1.2k
views
Comment: Comment: What are "must have" data types one should extract from WGS .fq data?
2.5 years ago by optimistsso4co3 ▴ 110
0
votes
5
replies
1.2k
views
What are "must have" data types one should extract from WGS .fq data?
wgs
updated 2.5 years ago by 161k • written 2.5 years ago by ▴ 110
0
votes
1
reply
810
views
Comment: Comment: Is it ok to replace missing WGS calls with reference notation "0/0"?
2.5 years ago by optimistsso4co3 ▴ 110
6
votes
3
replies
810
views
Is it ok to replace missing WGS calls with reference notation "0/0"?
wgs
updated 2.5 years ago by 161k • written 2.5 years ago by ▴ 110
6
votes
1
reply
3.8k
views
Can someone explain PLINK allele REF/ALT management strategy?
plink
updated 2.5 years ago by 10k • written 2.5 years ago by ▴ 110
2
votes
1
reply
675
views
What is the largest freely available dataset of WGS samples?
wgs
updated 2.5 years ago by ▴ 250 • written 2.5 years ago by ▴ 110
0
votes
1
reply
986
views
How to best predict effect for each variant and count specific effect found in each individual using variant effect predictor?
vcf vep
updated 2.6 years ago by 23k • written 2.6 years ago by ▴ 110
0
votes
1
reply
1.9k
views
Comment: Comment: How to pass custom software specific variables to nf-core/sarek nextflow pipelin
2.8 years ago by optimistsso4co3 ▴ 110
0
votes
2
replies
1.9k
views
Comment: Comment: How to pass custom software specific variables to nf-core/sarek nextflow pipelin
2.8 years ago by optimistsso4co3 ▴ 110
2
votes
5
replies
1.9k
views
How to pass custom software specific variables to nf-core/sarek nextflow pipeline?
wgs
updated 2.6 years ago by ★ 1.4k • written 2.8 years ago by ▴ 110
0
votes
0
replies
1.2k
views
Comment: Comment: How to paralle trim_galore for single sample?
2.8 years ago by optimistsso4co3 ▴ 110
4
votes
5
replies
1.2k
views
How to paralle trim_galore for single sample?
trim_galore
updated 2.8 years ago by 82k • written 2.8 years ago by ▴ 110
0
votes
0
replies
492
views
What causes highly inflated p values of X chromosome in PLINK association analysis?
plink
3.4 years ago by optimistsso4co3 ▴ 110
0
votes
1
reply
922
views
Whats the format for PLINK .set file for epistasis analysis?
plink epistasis .set
updated 3.6 years ago by 10k • written 3.6 years ago by ▴ 110
0
votes
0
replies
2.9k
views
Comment: C: GTEX - how to upload more than one rsIDs to get gene expression or eQTL informat
3.6 years ago by optimistsso4co3 ▴ 110
0
votes
1
reply
2.9k
views
Answer: A: GTEX - how to upload more than one rsIDs to get gene expression or eQTL informat
3.6 years ago by optimistsso4co3 ▴ 110
0
votes
2
replies
715
views
What's the probability of genotype error at the end of 10 repeated A variants? Given low coverage sequencing of 1000G phase 1
sequencing error
3.9 years ago by optimistsso4co3 ▴ 110
0
votes
1
reply
710
views
How to save SNPs removed by quality control? Plink
plink
4.1 years ago by optimistsso4co3 ▴ 110
3
votes
3
replies
1.6k
views
Whats the point of genotype pruning before imputation?
imputation plink --indep-pariwise r2
4.8 years ago by optimistsso4co3 ▴ 110
0
votes
0
replies
1.6k
views
Comment: C: Whats the point of genotype pruning before imputation?
4.8 years ago by optimistsso4co3 ▴ 110
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