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0
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3
replies
515
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Protocol to combine WGS with Nanopore for Structural Variant confirmation?
wgs
updated 4 months ago by ★ 1.9k • written 5 months ago by ▴ 110
0
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0
replies
306
views
Normalisation of PLINK/VCF files?
plink
9 months ago by optimistsso4co3 ▴ 110
1
vote
0
replies
500
views
Answer: Answer: Prediction of T2D, based on GWAS rsIDs
9 months ago by optimistsso4co3 ▴ 110
0
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0
replies
457
views
Guide for ICD-10 to EFO conversion?
icd10 efo
10 months ago by optimistsso4co3 ▴ 110
0
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0
replies
790
views
Comment: Comment: Don't see uploaded files for linking in EGA (European Genome Archive)
14 months ago by optimistsso4co3 ▴ 110
0
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2
replies
790
views
Don't see uploaded files for linking in EGA (European Genome Archive)
EGA
14 months ago by optimistsso4co3 ▴ 110
2
votes
1
reply
1.0k
views
How to Remove Phasing Information from a VCF File?
phasing
updated 14 months ago by 163k • written 14 months ago by ▴ 110
0
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1
reply
2.3k
views
Comment: Comment: Singularity image is not working in nextflow
15 months ago by optimistsso4co3 ▴ 110
0
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2
replies
2.3k
views
Comment: Comment: Singularity image is not working in nextflow
15 months ago by optimistsso4co3 ▴ 110
3
votes
6
replies
2.3k
views
Singularity image is not working in nextflow
nextflow singularity
updated 15 months ago by 84k • written 15 months ago by ▴ 110
0
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0
replies
307
views
Is there a array-based population dataset with phenotypes like eye colour available?
gwas
16 months ago by optimistsso4co3 ▴ 110
2
votes
1
reply
572
views
fastQC - how to know if sample is good quality ?
fastqc
updated 17 months ago by 44k • written 17 months ago by ▴ 110
0
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0
replies
472
views
Protocol to detect chromosomal ploidy from WGS VCF?
wgs ploidy
17 months ago by optimistsso4co3 ▴ 110
0
votes
2
replies
652
views
Can you apply Base Score Recalibration in parallel?
wgs
updated 18 months ago by 4.1k • written 18 months ago by ▴ 110
0
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1
reply
836
views
Comment: Comment: How to interpret deletion the length of chromosome?
18 months ago by optimistsso4co3 ▴ 110
0
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3
replies
836
views
How to interpret deletion the length of chromosome?
del
updated 18 months ago by 163k • written 18 months ago by ▴ 110
0
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7
replies
1.1k
views
Is it possible to query column of particular sample on VCF?
vcf
24 months ago by optimistsso4co3 ▴ 110
0
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0
replies
1.1k
views
Answer: Answer: Is it possible to query column of particular sample on VCF?
24 months ago by optimistsso4co3 ▴ 110
3
votes
6
replies
1.3k
views
How to filter VCF for only variants present in particular sample?
vcf
24 months ago by optimistsso4co3 ▴ 110
1
vote
0
replies
1.3k
views
Answer: Answer: How to filter VCF for only variants present in particular sample?
24 months ago by optimistsso4co3 ▴ 110
0
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0
replies
1.3k
views
Comment: Comment: How to filter VCF for only variants present in particular sample?
24 months ago by optimistsso4co3 ▴ 110
0
votes
1
reply
1.3k
views
Comment: Comment: How to filter VCF for only variants present in particular sample?
24 months ago by optimistsso4co3 ▴ 110
0
votes
1
reply
1.3k
views
Answer: Answer: How to filter VCF for only variants present in particular sample?
24 months ago by optimistsso4co3 ▴ 110
0
votes
0
replies
1.1k
views
Comment: Comment: Is it possible to query column of particular sample on VCF?
24 months ago by optimistsso4co3 ▴ 110
0
votes
1
reply
1.1k
views
Comment: Comment: Is it possible to query column of particular sample on VCF?
24 months ago by optimistsso4co3 ▴ 110
0
votes
1
reply
1.1k
views
Comment: Comment: Is it possible to query column of particular sample on VCF?
24 months ago by optimistsso4co3 ▴ 110
1
vote
2
replies
602
views
Is it possible to annotate each person individually with VEP?
VEP
updated 24 months ago by 4.1k • written 24 months ago by ▴ 110
1
vote
1
reply
497
views
Is there a tool to standartise ANY kind of human variant list file? (like vcf, plink, 23andMe etc)
23andme
updated 2.0 years ago by 2.8k • written 2.0 years ago by ▴ 110
0
votes
1
reply
603
views
Where to find Structural variant database dgvMerged for ANNOVAR?
annovar
2.0 years ago by optimistsso4co3 ▴ 110
0
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0
replies
603
views
Answer: Answer: Where to find Structural variant database dgvMerged for ANNOVAR?
2.0 years ago by optimistsso4co3 ▴ 110
0
votes
0
replies
416
views
How to control number of cores GATK can use?
gatk
2.1 years ago by optimistsso4co3 ▴ 110
0
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0
replies
1.0k
views
Comment: Comment: Research Scientist (Fungal & Algal Program)
2.1 years ago by optimistsso4co3 ▴ 110
0
votes
0
replies
475
views
Do you have to select "pulled" or "final" bam in MELT mobile element discovery step of genotyping?
melt
2.1 years ago by optimistsso4co3 ▴ 110
0
votes
0
replies
672
views
Comment: Comment: Mobile element discovery with MELT brings different results when chromosomes are
2.2 years ago by optimistsso4co3 ▴ 110
0
votes
2
replies
672
views
Mobile element discovery with MELT brings different results when chromosomes are analysed separate
melt
2.2 years ago by optimistsso4co3 ▴ 110
1
vote
1
reply
673
views
Is it possible to add variant type "VT" to each variant in vcf?
bcftools
updated 2.2 years ago by 44k • written 2.2 years ago by ▴ 110
0
votes
3
replies
658
views
gatk requests enormous amounts of memory. How to limit it?
gatk
updated 2.2 years ago by ▴ 830 • written 2.2 years ago by ▴ 110
0
votes
0
replies
471
views
How to extract region from GVCF file?
GVCF
2.3 years ago by optimistsso4co3 ▴ 110
1
vote
1
reply
473
views
How to calculate indels per individual?
vcf
updated 2.5 years ago by 163k • written 2.5 years ago by ▴ 110
1
vote
1
reply
1.1k
views
How to prepare vcf for use with Picard?
picard
updated 2.5 years ago by 163k • written 2.5 years ago by ▴ 110
0
votes
0
replies
457
views
How to fill vcf ALT field for sites where it's missing?
vcf
2.5 years ago by optimistsso4co3 ▴ 110
0
votes
0
replies
866
views
Comment: Comment: How to correct for allele frequency mismatches?
2.5 years ago by optimistsso4co3 ▴ 110
2
votes
2
replies
866
views
How to correct for allele frequency mismatches?
plink
2.5 years ago by optimistsso4co3 ▴ 110
6
votes
10
replies
1.7k
views
Why isn't it a common practice to call variant for every position in human genome?
ngs
updated 2.6 years ago by 22k • written 2.6 years ago by ▴ 110
1
vote
0
replies
1.7k
views
Comment: Comment: Why isn't it a common practice to call variant for every position in human genom
2.6 years ago by optimistsso4co3 ▴ 110
0
votes
0
replies
1.7k
views
Comment: Comment: Why isn't it a common practice to call variant for every position in human genom
2.6 years ago by optimistsso4co3 ▴ 110
0
votes
1
reply
1.7k
views
Comment: Comment: Why isn't it a common practice to call variant for every position in human genom
2.6 years ago by optimistsso4co3 ▴ 110
0
votes
1
reply
1.7k
views
Comment: Comment: Why isn't it a common practice to call variant for every position in human genom
2.6 years ago by optimistsso4co3 ▴ 110
0
votes
1
reply
623
views
Fastest pipeline for large scale joint genotype calling?
calling
updated 2.6 years ago by 163k • written 2.6 years ago by ▴ 110
0
votes
0
replies
479
views
Is there such thing as GVCF for structural variants allowing population genetics on SVs?
sv
2.7 years ago by optimistsso4co3 ▴ 110
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