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0
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3
replies
402
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Protocol to combine WGS with Nanopore for Structural Variant confirmation?
wgs
updated 7 weeks ago by ★ 1.9k • written 7 weeks ago by ▴ 110
0
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0
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268
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Normalisation of PLINK/VCF files?
plink
5 months ago by optimistsso4co3 ▴ 110
1
vote
0
replies
415
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Answer: Answer: Prediction of T2D, based on GWAS rsIDs
6 months ago by optimistsso4co3 ▴ 110
0
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0
replies
381
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Guide for ICD-10 to EFO conversion?
icd10 efo
6 months ago by optimistsso4co3 ▴ 110
0
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0
replies
649
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Comment: Comment: Don't see uploaded files for linking in EGA (European Genome Archive)
11 months ago by optimistsso4co3 ▴ 110
0
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2
replies
649
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Don't see uploaded files for linking in EGA (European Genome Archive)
EGA
11 months ago by optimistsso4co3 ▴ 110
2
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1
reply
858
views
How to Remove Phasing Information from a VCF File?
phasing
updated 11 months ago by 161k • written 11 months ago by ▴ 110
0
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1
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1.9k
views
Comment: Comment: Singularity image is not working in nextflow
12 months ago by optimistsso4co3 ▴ 110
0
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2
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1.9k
views
Comment: Comment: Singularity image is not working in nextflow
12 months ago by optimistsso4co3 ▴ 110
3
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6
replies
1.9k
views
Singularity image is not working in nextflow
nextflow singularity
updated 12 months ago by 81k • written 12 months ago by ▴ 110
0
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0
replies
276
views
Is there a array-based population dataset with phenotypes like eye colour available?
gwas
13 months ago by optimistsso4co3 ▴ 110
2
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1
reply
502
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fastQC - how to know if sample is good quality ?
fastqc
updated 13 months ago by 43k • written 13 months ago by ▴ 110
0
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0
replies
432
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Protocol to detect chromosomal ploidy from WGS VCF?
wgs ploidy
14 months ago by optimistsso4co3 ▴ 110
0
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2
replies
590
views
Can you apply Base Score Recalibration in parallel?
wgs
updated 14 months ago by 3.9k • written 14 months ago by ▴ 110
0
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1
reply
763
views
Comment: Comment: How to interpret deletion the length of chromosome?
15 months ago by optimistsso4co3 ▴ 110
0
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3
replies
763
views
How to interpret deletion the length of chromosome?
del
updated 15 months ago by 161k • written 15 months ago by ▴ 110
0
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7
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1.0k
views
Is it possible to query column of particular sample on VCF?
vcf
20 months ago by optimistsso4co3 ▴ 110
0
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0
replies
1.0k
views
Answer: Answer: Is it possible to query column of particular sample on VCF?
20 months ago by optimistsso4co3 ▴ 110
3
votes
6
replies
1.2k
views
How to filter VCF for only variants present in particular sample?
vcf
20 months ago by optimistsso4co3 ▴ 110
1
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0
replies
1.2k
views
Answer: Answer: How to filter VCF for only variants present in particular sample?
20 months ago by optimistsso4co3 ▴ 110
0
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0
replies
1.2k
views
Comment: Comment: How to filter VCF for only variants present in particular sample?
20 months ago by optimistsso4co3 ▴ 110
0
votes
1
reply
1.2k
views
Comment: Comment: How to filter VCF for only variants present in particular sample?
20 months ago by optimistsso4co3 ▴ 110
0
votes
1
reply
1.2k
views
Answer: Answer: How to filter VCF for only variants present in particular sample?
20 months ago by optimistsso4co3 ▴ 110
0
votes
0
replies
1.0k
views
Comment: Comment: Is it possible to query column of particular sample on VCF?
20 months ago by optimistsso4co3 ▴ 110
0
votes
1
reply
1.0k
views
Comment: Comment: Is it possible to query column of particular sample on VCF?
20 months ago by optimistsso4co3 ▴ 110
0
votes
1
reply
1.0k
views
Comment: Comment: Is it possible to query column of particular sample on VCF?
20 months ago by optimistsso4co3 ▴ 110
1
vote
2
replies
551
views
Is it possible to annotate each person individually with VEP?
VEP
updated 21 months ago by 3.9k • written 21 months ago by ▴ 110
1
vote
1
reply
444
views
Is there a tool to standartise ANY kind of human variant list file? (like vcf, plink, 23andMe etc)
23andme
updated 21 months ago by 2.8k • written 21 months ago by ▴ 110
0
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1
reply
553
views
Where to find Structural variant database dgvMerged for ANNOVAR?
annovar
21 months ago by optimistsso4co3 ▴ 110
0
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0
replies
553
views
Answer: Answer: Where to find Structural variant database dgvMerged for ANNOVAR?
21 months ago by optimistsso4co3 ▴ 110
0
votes
0
replies
386
views
How to control number of cores GATK can use?
gatk
22 months ago by optimistsso4co3 ▴ 110
0
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0
replies
952
views
Comment: Comment: Research Scientist (Fungal & Algal Program)
22 months ago by optimistsso4co3 ▴ 110
0
votes
0
replies
437
views
Do you have to select "pulled" or "final" bam in MELT mobile element discovery step of genotyping?
melt
22 months ago by optimistsso4co3 ▴ 110
0
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0
replies
618
views
Comment: Comment: Mobile element discovery with MELT brings different results when chromosomes are
22 months ago by optimistsso4co3 ▴ 110
0
votes
2
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618
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Mobile element discovery with MELT brings different results when chromosomes are analysed separate
melt
22 months ago by optimistsso4co3 ▴ 110
1
vote
1
reply
603
views
Is it possible to add variant type "VT" to each variant in vcf?
bcftools
updated 23 months ago by 43k • written 23 months ago by ▴ 110
0
votes
3
replies
592
views
gatk requests enormous amounts of memory. How to limit it?
gatk
updated 23 months ago by ▴ 830 • written 23 months ago by ▴ 110
0
votes
0
replies
433
views
How to extract region from GVCF file?
GVCF
24 months ago by optimistsso4co3 ▴ 110
1
vote
1
reply
421
views
How to calculate indels per individual?
vcf
updated 2.2 years ago by 161k • written 2.2 years ago by ▴ 110
1
vote
1
reply
1.0k
views
How to prepare vcf for use with Picard?
picard
updated 2.2 years ago by 161k • written 2.2 years ago by ▴ 110
0
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0
replies
419
views
How to fill vcf ALT field for sites where it's missing?
vcf
2.3 years ago by optimistsso4co3 ▴ 110
0
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0
replies
745
views
Comment: Comment: How to correct for allele frequency mismatches?
2.2 years ago by optimistsso4co3 ▴ 110
2
votes
2
replies
745
views
How to correct for allele frequency mismatches?
plink
2.2 years ago by optimistsso4co3 ▴ 110
6
votes
10
replies
1.6k
views
Why isn't it a common practice to call variant for every position in human genome?
ngs
updated 2.3 years ago by 22k • written 2.3 years ago by ▴ 110
1
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0
replies
1.6k
views
Comment: Comment: Why isn't it a common practice to call variant for every position in human genom
2.3 years ago by optimistsso4co3 ▴ 110
0
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0
replies
1.6k
views
Comment: Comment: Why isn't it a common practice to call variant for every position in human genom
2.3 years ago by optimistsso4co3 ▴ 110
0
votes
1
reply
1.6k
views
Comment: Comment: Why isn't it a common practice to call variant for every position in human genom
2.3 years ago by optimistsso4co3 ▴ 110
0
votes
1
reply
1.6k
views
Comment: Comment: Why isn't it a common practice to call variant for every position in human genom
2.3 years ago by optimistsso4co3 ▴ 110
0
votes
1
reply
578
views
Fastest pipeline for large scale joint genotype calling?
calling
updated 2.4 years ago by 161k • written 2.4 years ago by ▴ 110
0
votes
0
replies
449
views
Is there such thing as GVCF for structural variants allowing population genetics on SVs?
sv
2.4 years ago by optimistsso4co3 ▴ 110
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