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0
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198
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Comment: Comment: Don't see uploaded files for linking in EGA (European Genome Archive)
8 days ago by optimistsso4co3 ▴ 100
0
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2
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198
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Don't see uploaded files for linking in EGA (European Genome Archive)
EGA
8 days ago by optimistsso4co3 ▴ 100
2
votes
1
reply
237
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How to Remove Phasing Information from a VCF File?
phasing
updated 24 days ago by 154k • written 24 days ago by ▴ 100
0
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1
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565
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Comment: Comment: Singularity image is not working in nextflow
5 weeks ago by optimistsso4co3 ▴ 100
0
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2
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565
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Comment: Comment: Singularity image is not working in nextflow
5 weeks ago by optimistsso4co3 ▴ 100
3
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6
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565
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Singularity image is not working in nextflow
nextflow singularity
updated 5 weeks ago by 72k • written 5 weeks ago by ▴ 100
0
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0
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126
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Is there a array-based population dataset with phenotypes like eye colour available?
gwas
11 weeks ago by optimistsso4co3 ▴ 100
2
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1
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286
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fastQC - how to know if sample is good quality ?
fastqc
updated 12 weeks ago by 39k • written 12 weeks ago by ▴ 100
0
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0
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255
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Protocol to detect chromosomal ploidy from WGS VCF?
wgs ploidy
3 months ago by optimistsso4co3 ▴ 100
0
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2
replies
340
views
Can you apply Base Score Recalibration in parallel?
wgs
updated 3 months ago by 2.6k • written 3 months ago by ▴ 100
0
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1
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472
views
Comment: Comment: How to interpret deletion the length of chromosome?
4 months ago by optimistsso4co3 ▴ 100
0
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3
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472
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How to interpret deletion the length of chromosome?
del
updated 4 months ago by 154k • written 4 months ago by ▴ 100
0
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7
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703
views
Is it possible to query column of particular sample on VCF?
vcf
10 months ago by optimistsso4co3 ▴ 100
0
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0
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703
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Answer: Answer: Is it possible to query column of particular sample on VCF?
10 months ago by optimistsso4co3 ▴ 100
3
votes
6
replies
710
views
How to filter VCF for only variants present in particular sample?
vcf
10 months ago by optimistsso4co3 ▴ 100
1
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0
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710
views
Answer: Answer: How to filter VCF for only variants present in particular sample?
10 months ago by optimistsso4co3 ▴ 100
0
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0
replies
710
views
Comment: Comment: How to filter VCF for only variants present in particular sample?
10 months ago by optimistsso4co3 ▴ 100
0
votes
1
reply
710
views
Comment: Comment: How to filter VCF for only variants present in particular sample?
10 months ago by optimistsso4co3 ▴ 100
0
votes
1
reply
710
views
Answer: Answer: How to filter VCF for only variants present in particular sample?
10 months ago by optimistsso4co3 ▴ 100
0
votes
0
replies
703
views
Comment: Comment: Is it possible to query column of particular sample on VCF?
10 months ago by optimistsso4co3 ▴ 100
0
votes
1
reply
703
views
Comment: Comment: Is it possible to query column of particular sample on VCF?
10 months ago by optimistsso4co3 ▴ 100
0
votes
1
reply
703
views
Comment: Comment: Is it possible to query column of particular sample on VCF?
10 months ago by optimistsso4co3 ▴ 100
1
vote
2
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392
views
Is it possible to annotate each person individually with VEP?
VEP
updated 10 months ago by 2.6k • written 10 months ago by ▴ 100
1
vote
1
reply
297
views
Is there a tool to standartise ANY kind of human variant list file? (like vcf, plink, 23andMe etc)
23andme
updated 10 months ago by 2.7k • written 10 months ago by ▴ 100
0
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1
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371
views
Where to find Structural variant database dgvMerged for ANNOVAR?
annovar
10 months ago by optimistsso4co3 ▴ 100
0
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0
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371
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Answer: Answer: Where to find Structural variant database dgvMerged for ANNOVAR?
10 months ago by optimistsso4co3 ▴ 100
0
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0
replies
284
views
How to control number of cores GATK can use?
gatk
11 months ago by optimistsso4co3 ▴ 100
0
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0
replies
752
views
Comment: Comment: Research Scientist (Fungal & Algal Program)
12 months ago by optimistsso4co3 ▴ 100
0
votes
0
replies
301
views
Do you have to select "pulled" or "final" bam in MELT mobile element discovery step of genotyping?
melt
12 months ago by optimistsso4co3 ▴ 100
0
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0
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433
views
Comment: Comment: Mobile element discovery with MELT brings different results when chromosomes are
12 months ago by optimistsso4co3 ▴ 100
0
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2
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433
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Mobile element discovery with MELT brings different results when chromosomes are analysed separate
melt
12 months ago by optimistsso4co3 ▴ 100
1
vote
1
reply
347
views
Is it possible to add variant type "VT" to each variant in vcf?
bcftools
updated 12 months ago by 39k • written 12 months ago by ▴ 100
0
votes
3
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387
views
gatk requests enormous amounts of memory. How to limit it?
gatk
updated 12 months ago by ▴ 810 • written 12 months ago by ▴ 100
0
votes
0
replies
269
views
How to extract region from GVCF file?
GVCF
13 months ago by optimistsso4co3 ▴ 100
1
vote
1
reply
266
views
How to calculate indels per individual?
vcf
updated 16 months ago by 154k • written 16 months ago by ▴ 100
1
vote
1
reply
712
views
How to prepare vcf for use with Picard?
picard
updated 16 months ago by 154k • written 16 months ago by ▴ 100
0
votes
0
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291
views
How to fill vcf ALT field for sites where it's missing?
vcf
16 months ago by optimistsso4co3 ▴ 100
0
votes
0
replies
492
views
Comment: Comment: How to correct for allele frequency mismatches?
16 months ago by optimistsso4co3 ▴ 100
2
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2
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492
views
How to correct for allele frequency mismatches?
plink
16 months ago by optimistsso4co3 ▴ 100
6
votes
10
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1.1k
views
Why isn't it a common practice to call variant for every position in human genome?
ngs
updated 17 months ago by 21k • written 17 months ago by ▴ 100
1
vote
0
replies
1.1k
views
Comment: Comment: Why isn't it a common practice to call variant for every position in human genom
17 months ago by optimistsso4co3 ▴ 100
0
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0
replies
1.1k
views
Comment: Comment: Why isn't it a common practice to call variant for every position in human genom
17 months ago by optimistsso4co3 ▴ 100
0
votes
1
reply
1.1k
views
Comment: Comment: Why isn't it a common practice to call variant for every position in human genom
17 months ago by optimistsso4co3 ▴ 100
0
votes
1
reply
1.1k
views
Comment: Comment: Why isn't it a common practice to call variant for every position in human genom
17 months ago by optimistsso4co3 ▴ 100
0
votes
1
reply
426
views
Fastest pipeline for large scale joint genotype calling?
calling
updated 18 months ago by 154k • written 18 months ago by ▴ 100
0
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0
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298
views
Is there such thing as GVCF for structural variants allowing population genetics on SVs?
sv
18 months ago by optimistsso4co3 ▴ 100
2
votes
1
reply
371
views
How to extract specific location in .bam files
bam
updated 18 months ago by 129k • written 18 months ago by ▴ 100
0
votes
1
reply
482
views
Is it correct to merge multiple gvcf from separate variant calling?
gatk
updated 18 months ago by 21k • written 18 months ago by ▴ 100
0
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0
replies
558
views
Comment: Comment: Wha does combineGVCFs does to loci with variant only in gVCF from another analys
18 months ago by optimistsso4co3 ▴ 100
0
votes
1
reply
558
views
Wha does combineGVCFs does to loci with variant only in gVCF from another analysis?
gatk
18 months ago by optimistsso4co3 ▴ 100
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