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0
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replies
272
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Comment:
Comment: How to demultiplex single end - dual index run - NextSeq 500
1 hour ago by
Apex92
▴ 260
0
votes
0
replies
272
views
Comment:
Comment: How to demultiplex single end - dual index run - NextSeq 500
4 days ago by
Apex92
▴ 260
0
votes
1
reply
272
views
Comment:
Comment: How to demultiplex single end - dual index run - NextSeq 500
4 days ago by
Apex92
▴ 260
3
votes
5
replies
272
views
How to demultiplex single end - dual index run - NextSeq 500
sequencing
bcl2fastq
rna-seq
1 hour ago by
Apex92
▴ 260
0
votes
5
replies
365
views
How to get human cDNA sequences together with UTR regions?
transcripts
cDNA
genome
rna-seq
updated 12 days ago by
Istvan Albert
97k • written 12 days ago by
Apex92
▴ 260
0
votes
1
reply
365
views
Answer:
Answer: How to get human cDNA sequences together with UTR regions?
12 days ago by
Apex92
▴ 260
2
votes
2
replies
313
views
How to compare different illumina indices with each other to see how similar or different they are
alignment
sequencing
rna-seq
updated 7 weeks ago by
GenoMax
127k • written 7 weeks ago by
Apex92
▴ 260
1
vote
0
replies
650
views
Comment:
Comment: Annotating ENS codes to gene name
7 weeks ago by
Apex92
▴ 260
1
vote
1
reply
650
views
Answer:
Answer: Annotating ENS codes to gene name
7 weeks ago by
Apex92
▴ 260
0
votes
0
replies
327
views
Answer:
Answer: transcriptomincs
8 weeks ago by
Apex92
▴ 260
1
vote
0
replies
355
views
Comment:
Comment: Gene id to Uniprot id
10 weeks ago by
Apex92
▴ 260
0
votes
1
reply
506
views
Comment:
Comment: Bowtie error when indexing a reference file
10 weeks ago by
Apex92
▴ 260
0
votes
1
reply
506
views
Comment:
Comment: Bowtie error when indexing a reference file
10 weeks ago by
Apex92
▴ 260
1
vote
6
replies
506
views
Bowtie error when indexing a reference file
bowtie
RNA-seq
updated 10 weeks ago by
ATpoint
70k • written 10 weeks ago by
Apex92
▴ 260
0
votes
9
replies
796
views
Differential gene expression analysis with no replicates using edgeR
edgeR
RNA-seq
DEG
updated 3 months ago by
Ram
38k • written 3 months ago by
Apex92
▴ 260
0
votes
2
replies
796
views
Comment:
Comment: Differential gene expression analysis with no replicates using edgeR
3 months ago by
Apex92
▴ 260
0
votes
0
replies
414
views
Comment:
Comment: How to download the entire Run from Basespace illumina
3 months ago by
Apex92
▴ 260
4
votes
2
replies
414
views
How to download the entire Run from Illumina BaseSpace
illumina
sequencing
RNA-seq
3 months ago by
Apex92
▴ 260
0
votes
0
replies
496
views
Comment:
Comment: How to open/work with wig or tdf files
4 months ago by
Apex92
▴ 260
2
votes
3
replies
496
views
How to open/work with wig or tdf files
IGV
sequencing
wig
rna-seq
tdf
4 months ago by
Apex92
▴ 260
0
votes
1
reply
464
views
Comment:
Comment: The concept of differentially expressed genes at exon and intron level
6 months ago by
Apex92
▴ 260
2
votes
3
replies
464
views
The concept of differentially expressed genes at exon and intron level
transcription
DEG
RNA-Seq
sequencing
genome
updated 6 months ago by
lieven.sterck
14k • written 6 months ago by
Apex92
▴ 260
0
votes
0
replies
451
views
Comment:
Comment: How to choose one TSS for every gene using Gencode annotation file?
7 months ago by
Apex92
▴ 260
3
votes
3
replies
451
views
How to choose one TSS for every gene using Gencode annotation file?
TSS
transcription
sequencing
RNA-seq
7 months ago by
Apex92
▴ 260
0
votes
0
replies
359
views
Comment:
Comment: Cell cycle arrest analysis using bulk RNA-seq
7 months ago by
Apex92
▴ 260
1
vote
2
replies
359
views
Cell cycle arrest analysis using bulk RNA-seq
rna-seq
RNA-Seq
sequencing
cell-cycle
genome
7 months ago by
Apex92
▴ 260
0
votes
0
replies
167
views
How robust is rMATS when swapping samples?
splicing
rmats
RNA-seq
STAR
alternative
8 months ago by
Apex92
▴ 260
0
votes
0
replies
431
views
Comment:
Comment: Error when using edgeR with only two samples
9 months ago by
Apex92
▴ 260
4
votes
2
replies
431
views
Error when using edgeR with only two samples
RNA-seq
DGE
sequencing
edgeR
9 months ago by
Apex92
▴ 260
0
votes
1
reply
796
views
Comment:
Comment: edgeR glmRT code error message
9 months ago by
Apex92
▴ 260
0
votes
1
reply
488
views
Comment:
Comment: How to perform differential gene expression analysis with only one replicate in
9 months ago by
Apex92
▴ 260
2
votes
4
replies
488
views
How to perform differential gene expression analysis with only one replicate in each condition
RNA-seq
DEG
DESeq2
sequencing
updated 9 months ago by
Michael Dondrup
52k • written 9 months ago by
Apex92
▴ 260
1
vote
0
replies
483
views
Answer:
Answer: miRNA help
12 months ago by
Apex92
▴ 260
0
votes
0
replies
300
views
How to edit a SAM file using pysam
sam
pysam
mapping
algnment
bam
12 months ago by
Apex92
▴ 260
0
votes
0
replies
614
views
Comment:
Comment: What could be a good balance between baseMean and Log2FoldChange?
12 months ago by
Apex92
▴ 260
0
votes
5
replies
614
views
What could be a good balance between baseMean and Log2FoldChange?
expression
gene
statistics
DESeq2
DEG
12 months ago by
Apex92
▴ 260
0
votes
1
reply
614
views
Answer:
Answer: What could be a good balance between baseMean and Log2FoldChange?
12 months ago by
Apex92
▴ 260
0
votes
0
replies
614
views
Comment:
Comment: What could be a good balance between baseMean and Log2FoldChange?
12 months ago by
Apex92
▴ 260
0
votes
0
replies
338
views
Comment:
Comment: What is a suitable Gene Ontology Enrichment Analaysis tool?
12 months ago by
Apex92
▴ 260
3
votes
2
replies
338
views
What is a suitable Gene Ontology Enrichment Analaysis tool?
statistics
Enrichment
Ontology
12 months ago by
Apex92
▴ 260
0
votes
0
replies
306
views
What is the latest and reliable Gene Ontology analysis tool in Python
sequencing
ontology
genome
enrichr
RNA-Seq
12 months ago by
Apex92
▴ 260
0
votes
2
replies
1.3k
views
Comment:
Comment: NextSeq 2000 bcl2fastq conversion
12 months ago by
Apex92
▴ 260
0
votes
4
replies
1.3k
views
NextSeq 2000 bcl2fastq conversion
sequencing
bcl2fastq
fastq
updated 12 months ago by
GenoMax
127k • written 12 months ago by
Apex92
▴ 260
0
votes
1
reply
768
views
bcl2fastq error with RunInfo.xml
sequencing
bcl2fastq
fastq
updated 12 months ago by
swbarnes2
13k • written 12 months ago by
Apex92
▴ 260
0
votes
2
replies
611
views
Comment:
Comment: How to get rid of mis-assigned reads without having bcl files or index informati
13 months ago by
Apex92
▴ 260
2
votes
4
replies
611
views
How to get rid of mis-assigned reads without having bcl files or index information?
alignment
fastq
RNA-seq
updated 13 months ago by
swbarnes2
13k • written 13 months ago by
Apex92
▴ 260
4
votes
1
reply
1.0k
views
Answer:
Answer: help in my miRNA analysis
13 months ago by
Apex92
▴ 260
1
vote
0
replies
361
views
Comment:
Comment: Low number of differentially expressed genes in scRNAseq
13 months ago by
Apex92
▴ 260
1
vote
0
replies
971
views
Comment:
Comment: Analyzing and slicing FASTQ file entries using Python
13 months ago by
Apex92
▴ 260
1
vote
1
reply
971
views
Comment:
Comment: Analyzing and slicing FASTQ file entries using Python
13 months ago by
Apex92
▴ 260
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