Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
216
views
Comment: Comment: Error when using edgeR with only two samples
24 days ago by Apex92 ▴ 200
4
votes
2
replies
216
views
Error when using edgeR with only two samples
RNA-seq DGE sequencing edgeR
24 days ago by Apex92 ▴ 200
0
votes
0
replies
549
views
Comment: Comment: edgeR glmRT code error message
24 days ago by Apex92 ▴ 200
0
votes
1
reply
299
views
Comment: Comment: How to perform differential gene expression analysis with only one replicate in
29 days ago by Apex92 ▴ 200
2
votes
4
replies
299
views
How to perform differential gene expression analysis with only one replicate in each condition
RNA-seq DEG DESeq2 sequencing
updated 29 days ago by 52k • written 29 days ago by ▴ 200
1
vote
0
replies
289
views
Answer: Answer: miRNA help
3 months ago by Apex92 ▴ 200
0
votes
0
replies
126
views
How to edit a SAM file using pysam
sam pysam mapping algnment bam
3 months ago by Apex92 ▴ 200
0
votes
0
replies
433
views
Comment: Comment: What could be a good balance between baseMean and Log2FoldChange?
3 months ago by Apex92 ▴ 200
0
votes
5
replies
433
views
What could be a good balance between baseMean and Log2FoldChange?
expression gene statistics DESeq2 DEG
3 months ago by Apex92 ▴ 200
0
votes
1
reply
433
views
Answer: Answer: What could be a good balance between baseMean and Log2FoldChange?
3 months ago by Apex92 ▴ 200
0
votes
0
replies
433
views
Comment: Comment: What could be a good balance between baseMean and Log2FoldChange?
3 months ago by Apex92 ▴ 200
0
votes
0
replies
226
views
Comment: Comment: What is a suitable Gene Ontology Enrichment Analaysis tool?
3 months ago by Apex92 ▴ 200
3
votes
2
replies
226
views
What is a suitable Gene Ontology Enrichment Analaysis tool?
statistics Enrichment Ontology
3 months ago by Apex92 ▴ 200
0
votes
0
replies
134
views
What is the latest and reliable Gene Ontology analysis tool in Python
sequencing ontology genome enrichr RNA-Seq
3 months ago by Apex92 ▴ 200
0
votes
2
replies
623
views
Comment: Comment: NextSeq 2000 bcl2fastq conversion
3 months ago by Apex92 ▴ 200
0
votes
4
replies
623
views
NextSeq 2000 bcl2fastq conversion
sequencing bcl2fastq fastq
updated 3 months ago by 117k • written 3 months ago by ▴ 200
0
votes
1
reply
261
views
bcl2fastq error with RunInfo.xml
sequencing bcl2fastq fastq
updated 3 months ago by 12k • written 3 months ago by ▴ 200
0
votes
2
replies
439
views
Comment: Comment: How to get rid of mis-assigned reads without having bcl files or index informati
4 months ago by Apex92 ▴ 200
2
votes
4
replies
439
views
How to get rid of mis-assigned reads without having bcl files or index information?
alignment fastq RNA-seq
updated 4 months ago by 12k • written 4 months ago by ▴ 200
4
votes
1
reply
688
views
Answer: Answer: help in my miRNA analysis
4 months ago by Apex92 ▴ 200
1
vote
0
replies
266
views
Comment: Comment: Low number of differentially expressed genes in scRNAseq
4 months ago by Apex92 ▴ 200
1
vote
0
replies
677
views
Comment: Comment: Analyzing and slicing FASTQ file entries using Python
4 months ago by Apex92 ▴ 200
1
vote
1
reply
677
views
Comment: Comment: Analyzing and slicing FASTQ file entries using Python
4 months ago by Apex92 ▴ 200
5
votes
7
replies
677
views
Analyzing and slicing FASTQ file entries using Python
biopython sequence performance FASTQ
updated 4 months ago by 146k • written 4 months ago by ▴ 200
0
votes
1
reply
677
views
Answer: Answer: Analyzing and slicing FASTQ file entries using Python
4 months ago by Apex92 ▴ 200
0
votes
1
reply
328
views
Comment: Comment: How to output FASTQ file with four lines per sequence?
4 months ago by Apex92 ▴ 200
1
vote
3
replies
328
views
How to output FASTQ file with four lines per sequence?
biopython python fastq
updated 4 months ago by 21k • written 4 months ago by ▴ 200
0
votes
1
reply
347
views
Comment: Comment: How many skipped exons is expected by chance?
4 months ago by Apex92 ▴ 200
1
vote
3
replies
347
views
How many skipped exons is expected by chance?
splicing statistics exon rna-seq
updated 4 months ago by 93k • written 4 months ago by ▴ 200
0
votes
0
replies
347
views
Comment: Comment: Any tool to detect differential splicing of a gene between samples?
5 months ago by Apex92 ▴ 200
2
votes
3
replies
347
views
Any tool to detect differential splicing of a gene between samples?
sequence MISO splicing bam RNA-Seq
5 months ago by Apex92 ▴ 200
0
votes
1
reply
394
views
Comment: Comment: How to interpret arcs in the Sashimi plots (IGV)?
5 months ago by Apex92 ▴ 200
0
votes
3
replies
394
views
How to interpret arcs in the Sashimi plots (IGV)?
sequencing Sashimi IGV alignment rna-seq
updated 5 months ago by ★ 2.8k • written 5 months ago by ▴ 200
1
vote
0
replies
656
views
Comment: Comment: Why there are symmetric splice junctions on IGV?
5 months ago by Apex92 ▴ 200
0
votes
1
reply
656
views
Comment: Comment: Why there are symmetric splice junctions on IGV?
5 months ago by Apex92 ▴ 200
2
votes
7
replies
656
views
Why there are symmetric splice junctions on IGV?
sequencing bam IGV alignment rna-seq
5 months ago by Apex92 ▴ 200
0
votes
0
replies
726
views
Comment: Comment: The distance in nucleotide between two genes on different strands
8 months ago by Apex92 ▴ 200
0
votes
0
replies
13k
views
Comment: Comment: bcl2fastq2: how to correctly use the --use-bases-mask for different sequencing m
9 months ago by Apex92 ▴ 200
0
votes
0
replies
240
views
Segemehl -D option doesnt work for allowing differences
alignment RNA-Seq segemehl
updated 9 months ago by 36k • written 9 months ago by ▴ 200
1
vote
2
replies
1.1k
views
How to calculate probability of overlap between two sets
overlap r statistics
updated 9 months ago by 93k • written 9 months ago by ▴ 200
0
votes
0
replies
936
views
Comment: Comment: the --fraction option of featureCounts
11 months ago by Apex92 ▴ 200
0
votes
1
reply
936
views
Comment: Comment: the --fraction option of featureCounts
11 months ago by Apex92 ▴ 200
2
votes
4
replies
936
views
the --fraction option of featureCounts
RNA-Seq featureCounts rna-seq genome sequencing
11 months ago by Apex92 ▴ 200
0
votes
0
replies
254
views
How to divide reads mapping to two different genes using featureCounts
featureCounts mapping alignment rna-seq
12 months ago by Apex92 ▴ 200
2
votes
6
replies
783
views
How to find overlapping coordinates of a gtf file
gtf-file sequencing genome annotation RNA-Seq
updated 12 months ago by 34k • written 12 months ago by ▴ 200
0
votes
0
replies
783
views
Comment: Comment: How to find overlapping coordinates of a gtf file
12 months ago by Apex92 ▴ 200
0
votes
0
replies
783
views
Comment: Comment: How to find overlapping coordinates of a gtf file
12 months ago by Apex92 ▴ 200
0
votes
1
reply
279
views
RefSeq obtained from genome.ucsc.edu
Annotation sequence Genome-browser file
updated 14 months ago by 117k • written 14 months ago by ▴ 200
0
votes
0
replies
493
views
Comment: Comment: How to get Python code to run correctly for hetero-dimerization analysis
14 months ago by Apex92 ▴ 200
1
vote
2
replies
493
views
How to get Python code to run correctly for hetero-dimerization analysis
python sequence programming FASTA
updated 14 months ago by 21k • written 14 months ago by ▴ 200
126 results • Page 1 of 3
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6