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questions
0
votes
0
replies
543
views
What is the common lncRNA-target reference file with proper lncRNA gene name?
lncRNA
gene
sequencing
genome
sequence
3.2 years ago by
Apex92
▴ 280
0
votes
0
replies
496
views
lncRNA-target reference file with proper gene nomenclature
gene
genome-sequencing
lincRNA
updated 13 months ago by
Ram
43k • written 3.2 years ago by
Apex92
▴ 280
0
votes
4
replies
767
views
Select sequences if contain two specific substrings
sequence
RNA-Seq
software error
python
updated 3.3 years ago by
Biostar
20 • written 3.4 years ago by
Apex92
▴ 280
2
votes
2
replies
1.3k
views
Is there a way to map long fasta reads to short reference sequences?
alignment
rna-seq
bowtie
updated 3.4 years ago by
karl.stamm
4.1k • written 3.4 years ago by
Apex92
▴ 280
2
votes
8
replies
2.0k
views
How to map longer reads against a local reference using Bowtie
alignment
bowtie
sequence
mismatch
RNA-Seq
updated 2.8 years ago by
LI_zhihui
• 0 • written 3.4 years ago by
Apex92
▴ 280
9
votes
25
replies
6.7k
views
bcl2fastq --use-bases-mask error for dual index reads
sequencing
software error
bcl2fastq
3.5 years ago by
Apex92
▴ 280
2
votes
1
reply
844
views
Why do I see 3-nucleotide periodicity in RNA-Seq?
sequencing
alignment
rna-seq
next-gen
3.6 years ago by
Apex92
▴ 280
0
votes
8
replies
1.9k
views
How to bin a genome to different regions
rna-seq
RNA-Seq
genome
sequencing
binning
updated 3.6 years ago by
Alex Reynolds
35k • written 3.6 years ago by
Apex92
▴ 280
2
votes
1
reply
661
views
How to make a customized gtf file for differential expression purposes
RNA-Seq
alignment
sequence
next-gen
R
3.6 years ago by
Apex92
▴ 280
1
vote
2
replies
2.2k
views
Error loading BAM on IGV
software error
igv
bam
updated 3.6 years ago by
Pierre Lindenbaum
161k • written 3.6 years ago by
Apex92
▴ 280
2
votes
2
replies
1.5k
views
I get different ENSG IDs for the same MSTRG ID
RNA-Seq
Assembly
rna-seq
alignment
next-gen
updated 3.6 years ago by
Kristoffer Vitting-Seerup
★ 4.0k • written 4.8 years ago by
Apex92
▴ 280
2
votes
5
replies
1.3k
views
-m option of HTSeq in featureCounts
sequencing
gene
rna-seq
next-gen
updated 3.8 years ago by
Istvan Albert
100k • written 3.8 years ago by
Apex92
▴ 280
0
votes
0
replies
833
views
Samtools flagstat with sncRNA (single-end reads)
sequence
rna-seq
alignment
3.8 years ago by
Apex92
▴ 280
1
vote
3
replies
1.0k
views
How many of the reads end up being counted by HTSeq count
rna-seq
Assembly
sequence
updated 3.8 years ago by
Ido Tamir
5.2k • written 3.8 years ago by
Apex92
▴ 280
5
votes
2
replies
2.4k
views
Don't let TopGo to trimm long GO names
topgo
RNA-Seq
software error
next-gen
goenrichment
3.9 years ago by
Apex92
▴ 280
0
votes
6
replies
1.8k
views
Error with using getBM function in biomaRt
rna-seq
R
software error
biomaRt
3.9 years ago by
Apex92
▴ 280
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