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Showing :
questions
0
votes
3
replies
469
views
Viral genes not showing up in combined mouse+virus alignment
RNAseq
5 months ago by
cook.675
▴ 220
0
votes
2
replies
596
views
featureCount Error "No paired-end reads were detected in paired-end read library"
Subread
RNAseq
featureCount
updated 5 months ago by
rpolicastro
13k • written 5 months ago by
cook.675
▴ 220
1
vote
4
replies
755
views
RNAseq how to map Mouse+Virus Genome with STAR
STAR
GTF
RNA-seq
fasta
updated 5 months ago by
GenoMax
142k • written 5 months ago by
cook.675
▴ 220
0
votes
2
replies
481
views
How to bin groups of 20 cells based amount of a metadata value
data
seurat
scRNA-seq
R
updated 2.1 years ago by
GenoMax
142k • written 2.1 years ago by
cook.675
▴ 220
0
votes
1
reply
516
views
How to label metadata of Seurat object based gene read count
seurat
scRNA-seq
updated 2.1 years ago by
rpolicastro
13k • written 2.1 years ago by
cook.675
▴ 220
13
votes
12
replies
27k
views
10 follow
Pull number of cells in cluster from seurat object
RNA-Seq
seurat
updated 2.2 years ago by
GenoMax
142k • written 4.6 years ago by
cook.675
▴ 220
2
votes
6
replies
12k
views
Looking for differential gene expression between treatment, within a specific cluster (seurat)
seurat
updated 2.9 years ago by
tdfyoder
▴ 40 • written 4.6 years ago by
cook.675
▴ 220
0
votes
2
replies
661
views
RNAseq Per tile sequence quality question
RNAseq
fastqc
3.0 years ago by
cook.675
▴ 220
7
votes
3
replies
11k
views
appending information to seurat object meta.data
scRNA
seurat
updated 2.7 years ago by
atakanekiz
▴ 310 • written 4.4 years ago by
cook.675
▴ 220
4
votes
3
replies
9.3k
views
How to remove entire rows from seurat object based on cellhash read
seurat
updated 4.0 years ago by
f.morgana
• 0 • written 4.6 years ago by
cook.675
▴ 220
1
vote
1
reply
1.7k
views
Calling gene names from a list within Seurat subset function
seurat
RNA-Seq
updated 13 months ago by
Yeonjoo
• 0 • written 4.1 years ago by
cook.675
▴ 220
1
vote
1
reply
736
views
Summing data from 3 different parts of an R object at once
R
seurat
scRNA seq
updated 4.4 years ago by
Biostar
20 • written 4.5 years ago by
cook.675
▴ 220
0
votes
2
replies
1.3k
views
How to extract a specific gene sequence for a specific cell from scRNA-seq fastq file
scRNA-seq
sequencing
updated 4.4 years ago by
mahmoud.s.fahmy
• 0 • written 4.4 years ago by
cook.675
▴ 220
0
votes
6
replies
2.0k
views
Examination of data matrix from CITE-seq-counts
RNA-Seq
seurat
updated 4.4 years ago by
Biostar
20 • written 4.6 years ago by
cook.675
▴ 220
0
votes
2
replies
5.9k
views
How to combine seperate seurat meta.data ID;s into one column?
seurat
scRNA
updated 4.4 years ago by
Ram
43k • written 4.4 years ago by
cook.675
▴ 220
5
votes
10
replies
21k
views
subsetting out cells from seurat object based on expression of 1 gene
seurat
R
updated 2.6 years ago by
Ondina
▴ 100 • written 4.5 years ago by
cook.675
▴ 220
6
votes
3
replies
3.6k
views
A brief question regarding regressing out cell cycle effects or ribosomal/mitochondrial genes
seuart
scRNA seq
updated 4.5 years ago by
jared.andrews07
★ 16k • written 4.5 years ago by
cook.675
▴ 220
0
votes
5
replies
1.1k
views
DEG data per-cell
RNA-Seq
4.5 years ago by
cook.675
▴ 220
0
votes
0
replies
1.4k
views
Interpreting DEG heatmap between treatment groups
heatmap
scRNASEQ
4.5 years ago by
cook.675
▴ 220
0
votes
1
reply
2.2k
views
How to concurrently filter RNA and CITEseq data within seurat object
scRNA
seurat
4.5 years ago by
cook.675
▴ 220
0
votes
1
reply
1.3k
views
QC filtering by Count depth
scRNAseq
4.5 years ago by
cook.675
▴ 220
0
votes
6
replies
2.0k
views
PCA plot interpretation from scRNA data set
PCA
scRNA seq
seurat
4.5 years ago by
cook.675
▴ 220
0
votes
6
replies
1.6k
views
subsetting matrix elements and creating a histogram
RNA-Seq
updated 4.6 years ago by
Ram
43k • written 4.6 years ago by
cook.675
▴ 220
7
votes
3
replies
9.6k
views
How to delete Assay from Seurat object?
seurat
RNA-Seq
updated 4.6 years ago by
jared.andrews07
★ 16k • written 4.6 years ago by
cook.675
▴ 220
1
vote
6
replies
2.9k
views
vector memory exhausted running dist() on a single ADT dataset
seurat
RNA-Seq
updated 4.6 years ago by
Jean-Karim Heriche
27k • written 4.6 years ago by
cook.675
▴ 220
16
votes
5
replies
33k
views
Seurat DefaultAssay "integrated" or "RNA" with integrated dataset????
seurat
updated 4.6 years ago by
shoujun.gu
▴ 350 • written 4.6 years ago by
cook.675
▴ 220
4
votes
3
replies
3.6k
views
Need help with simple FOR loop
seurat
RNA-Seq
updated 4.6 years ago by
Prakash
★ 2.2k • written 4.6 years ago by
cook.675
▴ 220
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