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Comment: Comment: featureCounts output file chromosome identifier issue
7 weeks ago by tanbiswas6 ▴ 10
1
vote
3
replies
292
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featureCounts output file chromosome identifier issue
featureCounts RNASeq trnascriptome WTS sequencing
updated 7 weeks ago by 141k • written 7 weeks ago by ▴ 10
0
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0
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447
views
Comment: Comment: How to identify biallelic mutations called using WES data?
7 weeks ago by tanbiswas6 ▴ 10
0
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1
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447
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Comment: Comment: How to identify biallelic mutations called using WES data?
8 weeks ago by tanbiswas6 ▴ 10
2
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5
replies
447
views
How to identify biallelic mutations called using WES data?
mutect2 gatk wes mutation
7 weeks ago by tanbiswas6 ▴ 10
1
vote
1
reply
806
views
How to calculate tumor mutation burden (TMB)?
TMB Mutations WES Sequencing Mutationrate
updated 14 months ago by ★ 3.0k • written 15 months ago by ▴ 10
0
votes
1
reply
730
views
vcf2maf errors: Chr isn't numeric in subtraction
VEP vcf2maf variants VCF
15 months ago by tanbiswas6 ▴ 10
2
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7
replies
1.8k
views
FASTQC Per base sequence content failed WES
DNA-seq QC WES FASTQC
updated 16 months ago by 141k • written 16 months ago by ▴ 10
0
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2
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1.8k
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Comment: Comment: FASTQC Per base sequence content failed WES
16 months ago by tanbiswas6 ▴ 10
0
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0
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1.8k
views
Comment: Comment: FASTQC Per base sequence content failed WES
16 months ago by tanbiswas6 ▴ 10
0
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0
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931
views
Copy number axis in sequenza result files are not fully resolved.
CNVs sequenza
3.8 years ago by tanbiswas6 ▴ 10
0
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0
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4.1k
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Comment: C: CNVKit noisy scatter plot
3.9 years ago by tanbiswas6 ▴ 10
0
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0
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4.1k
views
Comment: C: CNVKit noisy scatter plot
3.9 years ago by tanbiswas6 ▴ 10
0
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1
reply
4.1k
views
Comment: C: CNVKit noisy scatter plot
3.9 years ago by tanbiswas6 ▴ 10
2
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13
replies
4.1k
views
CNVKit noisy scatter plot
CNV CNVkit copy number profile CNV on WES data
updated 3.9 years ago by ▴ 180 • written 3.9 years ago by ▴ 10
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0
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5.6k
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Comment: C: Whole Exome CNV tools
3.9 years ago by tanbiswas6 ▴ 10
0
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1
reply
4.1k
views
Comment: C: CNVKit noisy scatter plot
3.9 years ago by tanbiswas6 ▴ 10
0
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1
reply
4.1k
views
Comment: C: CNVKit noisy scatter plot
3.9 years ago by tanbiswas6 ▴ 10
0
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0
replies
1.4k
views
Preparing pyclone input files
vcf pyclone
updated 13 months ago by 43k • written 4.0 years ago by ▴ 10
0
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1
reply
1.4k
views
Comment: C: CNV Profile figure
4.3 years ago by tanbiswas6 ▴ 10
1
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6
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1.4k
views
CNV Profile figure
CNV Control-Freec
4.3 years ago by tanbiswas6 ▴ 10
0
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2
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1.1k
views
Copy number profile using Control-FREEC
Control-FREEC CNV Copy number profilr
updated 4.4 years ago by 87k • written 4.4 years ago by ▴ 10
0
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2
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3.2k
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Answer: A: Copy number profile using VarScan
4.4 years ago by tanbiswas6 ▴ 10
1
vote
8
replies
3.2k
views
Copy number profile using VarScan
CNVs VarScan R CNV_Graph
4.4 years ago by tanbiswas6 ▴ 10
0
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0
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752
views
merge segment using varscan
VarScan Merge_segments CNVs
4.5 years ago by tanbiswas6 ▴ 10
0
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0
replies
760
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Comment: A: Problem while calling copynumber variants using VarScan
4.5 years ago by tanbiswas6 ▴ 10
0
votes
2
replies
760
views
Problem while calling copynumber variants using VarScan
CNV_VarScan
4.5 years ago by tanbiswas6 ▴ 10
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