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6
votes
3
replies
2.4k
views
ChipQC doesn't run
ChIP-Seq
updated 4 weeks ago by • 0 • written 4.1 years ago by ▴ 140
18
votes
8
replies
8.0k
views
6 follow
CPM or TPM in GSEA analysis
RNA-Seq GSEA
updated 9 months ago by 3.9k • written 4.2 years ago by ▴ 140
0
votes
1
reply
847
views
Combining RNA and ATAC
Seurat atac single-cell signac rna
updated 22 months ago by ▴ 20 • written 22 months ago by ▴ 140
0
votes
0
replies
767
views
Comment: Comment: standardChromosomes() function not found but its guide yes.
22 months ago by francesca3 ▴ 140
0
votes
1
reply
767
views
Comment: Comment: standardChromosomes() function not found but its guide yes.
22 months ago by francesca3 ▴ 140
0
votes
4
replies
767
views
standardChromosomes() function not found but its guide yes.
Signac single-cell Seurat
22 months ago by francesca3 ▴ 140
0
votes
0
replies
739
views
Comment: Comment: Seurat cell cycle (single cell analysis)
23 months ago by francesca3 ▴ 140
0
votes
2
replies
739
views
Seurat cell cycle (single cell analysis)
single-cell Seurat cycle
23 months ago by francesca3 ▴ 140
0
votes
0
replies
580
views
Comment: Comment: Differential analysis on clusters identified by single-sample UMAP
2.1 years ago by francesca3 ▴ 140
0
votes
2
replies
580
views
Differential analysis on clusters identified by single-sample UMAP
single-cell Seurat
2.1 years ago by francesca3 ▴ 140
0
votes
0
replies
2.5k
views
Comment: Comment: Problems with colors in FeaturePlot after integration in Seurat
2.1 years ago by francesca3 ▴ 140
0
votes
1
reply
2.5k
views
Comment: Comment: Problems with colors in FeaturePlot after integration in Seurat
2.1 years ago by francesca3 ▴ 140
3
votes
4
replies
2.5k
views
Problems with colors in FeaturePlot after integration in Seurat
single-cell Seurat
2.1 years ago by francesca3 ▴ 140
0
votes
0
replies
822
views
Comment: Comment: bsmap /methratio/ paired end mode and unpaired aligned reads
2.2 years ago by francesca3 ▴ 140
2
votes
2
replies
822
views
bsmap /methratio/ paired end mode and unpaired aligned reads
paired methylation bisulfite bsmap alignment
2.2 years ago by francesca3 ▴ 140
0
votes
0
replies
300
views
How to interpret differential analysis results when comparing / combining three groups.
analysis rnaseq differential diffbind chipseq
2.2 years ago by francesca3 ▴ 140
0
votes
1
reply
917
views
Comment: Comment: bisulfite methylation alignment rate
2.2 years ago by francesca3 ▴ 140
1
vote
3
replies
917
views
bisulfite methylation alignment rate
bisulfite methylation bsmap alignment bismark
updated 2.2 years ago by 104k • written 2.2 years ago by ▴ 140
0
votes
0
replies
1.3k
views
Comment: Comment: About Mapping Efficiency of Bisulfite aligners
2.2 years ago by francesca3 ▴ 140
7
votes
3
replies
4.6k
views
Seurat-Merging and integrate
single-cell seurat
updated 2.4 years ago by ▴ 50 • written 2.4 years ago by ▴ 140
0
votes
0
replies
4.6k
views
Comment: Comment: Seurat-Merging and integrate
2.4 years ago by francesca3 ▴ 140
1
vote
3
replies
1.2k
views
TMM normalization and sex effect
edgeR diffbind rnaseq tmm
updated 2.6 years ago by ★ 2.0k • written 2.6 years ago by ▴ 140
0
votes
1
reply
1.2k
views
Comment: Comment: TMM normalization and sex effect
2.6 years ago by francesca3 ▴ 140
0
votes
1
reply
2.3k
views
Comment: Comment: Diffbind3 dba.plotMA error
2.8 years ago by francesca3 ▴ 140
0
votes
0
replies
1.1k
views
Comment: C: Searching for a free alternative to IPA
3.1 years ago by francesca3 ▴ 140
0
votes
2
replies
1.1k
views
Searching for a free alternative to IPA
rna-seq ipa
3.1 years ago by francesca3 ▴ 140
0
votes
1
reply
1.8k
views
Comment: C: Trim_galore with gnu parallel
3.2 years ago by francesca3 ▴ 140
1
vote
3
replies
1.8k
views
Trim_galore with gnu parallel
parallel trim_galore RNA-Seq trim fastq
3.2 years ago by francesca3 ▴ 140
0
votes
1
reply
1.4k
views
Comment: C: how matrix composition influences the final results in diff bind
3.6 years ago by francesca3 ▴ 140
0
votes
1
reply
1.4k
views
Comment: C: how matrix composition influences the final results in diff bind
3.6 years ago by francesca3 ▴ 140
0
votes
1
reply
1.4k
views
Comment: C: how matrix composition influences the final results in diff bind
3.6 years ago by francesca3 ▴ 140
0
votes
0
replies
1.4k
views
Comment: C: how matrix composition influences the final results in diff bind
3.6 years ago by francesca3 ▴ 140
5
votes
9
replies
1.4k
views
how matrix composition influences the final results in diff bind
ChIP-Seq diffbind
updated 3.6 years ago by ★ 2.0k • written 3.6 years ago by ▴ 140
0
votes
2
replies
8.2k
views
Comment: C: CPM function in EDGER
3.6 years ago by francesca3 ▴ 140
15
votes
6
replies
8.2k
views
CPM function in EDGER
edgerR RNA-Seq CPM
updated 3.6 years ago by 81k • written 3.6 years ago by ▴ 140
0
votes
0
replies
8.2k
views
Comment: C: CPM function in EDGER
3.6 years ago by francesca3 ▴ 140
0
votes
0
replies
814
views
Sicer - Peak calling-Filter called peaks based on scores
sicer ChIP-Seq peakcalling
3.8 years ago by francesca3 ▴ 140
6
votes
4
replies
1.4k
views
Extract RPKM values from Diffbind
ChIP-Seq Diffbind RPKM
updated 7 months ago by ▴ 190 • written 3.8 years ago by ▴ 140
1
vote
0
replies
1.4k
views
Comment: C: Extract RPKM values from Diffbind
3.8 years ago by francesca3 ▴ 140
2
votes
3
replies
3.7k
views
Missing a row name in Heatmap.2
R ggplots
updated 3.9 years ago by 43k • written 3.9 years ago by ▴ 140
1
vote
3
replies
1.2k
views
Diffbind- results different every time I run it
diffbind software error
updated 3.9 years ago by 54k • written 4.1 years ago by ▴ 140
1
vote
2
replies
926
views
CSAW- functions not present
csaw chipseq ChIP-Seq csaw;
updated 4.1 years ago by 81k • written 4.1 years ago by ▴ 140
0
votes
0
replies
1.2k
views
Comment: C: Diffbind- results different every time I run it
4.1 years ago by francesca3 ▴ 140
2
votes
4
replies
2.0k
views
Diffbind-edgeR or Deseq2
ChIP-Seq
updated 4.1 years ago by 81k • written 4.1 years ago by ▴ 140
5
votes
2
replies
2.4k
views
Answer: C: ChipQC doesn't run
4.1 years ago by francesca3 ▴ 140
0
votes
2
replies
500
views
Tool to link a expression pattern to treatments effects
RNA-Seq
updated 4.2 years ago by 19k • written 4.2 years ago by ▴ 140
3
votes
2
replies
1.8k
views
How to perform PCA analysis
RNA-Seq PCA
updated 4.2 years ago by 87k • written 4.2 years ago by ▴ 140
0
votes
0
replies
857
views
Comment: C: Input data in GAGE Analysis
4.2 years ago by francesca3 ▴ 140
0
votes
1
reply
857
views
Input data in GAGE Analysis
RNA-Seq GAGE
4.2 years ago by francesca3 ▴ 140
0
votes
0
replies
1.7k
views
Comment: C: How to order rows in a dot plot with ggplot2
4.2 years ago by francesca3 ▴ 140
54 results • Page 1 of 2
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