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6
votes
3
replies
3.1k
views
ChipQC doesn't run
ChIP-Seq
updated 19 months ago by • 0 • written 5.6 years ago by ▴ 160
18
votes
8
replies
12k
views
6 follow
CPM or TPM in GSEA analysis
RNA-Seq GSEA
updated 2.3 years ago by 4.2k • written 5.7 years ago by ▴ 160
0
votes
1
reply
1.2k
views
Combining RNA and ATAC
Seurat atac single-cell signac rna
updated 3.4 years ago by ▴ 30 • written 3.4 years ago by ▴ 160
0
votes
0
replies
1.4k
views
Comment: Comment: standardChromosomes() function not found but its guide yes.
3.4 years ago by francesca3 ▴ 160
0
votes
1
reply
1.4k
views
Comment: Comment: standardChromosomes() function not found but its guide yes.
3.4 years ago by francesca3 ▴ 160
0
votes
4
replies
1.4k
views
standardChromosomes() function not found but its guide yes.
Signac single-cell Seurat
3.4 years ago by francesca3 ▴ 160
0
votes
0
replies
1.2k
views
Comment: Comment: Seurat cell cycle (single cell analysis)
3.4 years ago by francesca3 ▴ 160
0
votes
2
replies
1.2k
views
Seurat cell cycle (single cell analysis)
single-cell Seurat cycle
3.4 years ago by francesca3 ▴ 160
0
votes
0
replies
931
views
Comment: Comment: Differential analysis on clusters identified by single-sample UMAP
3.6 years ago by francesca3 ▴ 160
0
votes
2
replies
931
views
Differential analysis on clusters identified by single-sample UMAP
single-cell Seurat
3.6 years ago by francesca3 ▴ 160
0
votes
0
replies
3.6k
views
Comment: Comment: Problems with colors in FeaturePlot after integration in Seurat
3.6 years ago by francesca3 ▴ 160
0
votes
1
reply
3.6k
views
Comment: Comment: Problems with colors in FeaturePlot after integration in Seurat
3.6 years ago by francesca3 ▴ 160
3
votes
4
replies
3.6k
views
Problems with colors in FeaturePlot after integration in Seurat
single-cell Seurat
3.6 years ago by francesca3 ▴ 160
0
votes
0
replies
1.4k
views
Comment: Comment: bsmap /methratio/ paired end mode and unpaired aligned reads
3.7 years ago by francesca3 ▴ 160
2
votes
2
replies
1.4k
views
bsmap /methratio/ paired end mode and unpaired aligned reads
paired methylation bisulfite bsmap alignment
3.7 years ago by francesca3 ▴ 160
0
votes
0
replies
465
views
How to interpret differential analysis results when comparing / combining three groups.
analysis rnaseq differential diffbind chipseq
3.7 years ago by francesca3 ▴ 160
0
votes
1
reply
1.8k
views
Comment: Comment: bisulfite methylation alignment rate
3.7 years ago by francesca3 ▴ 160
1
vote
3
replies
1.8k
views
bisulfite methylation alignment rate
bisulfite methylation bsmap alignment bismark
updated 3.7 years ago by 105k • written 3.7 years ago by ▴ 160
0
votes
0
replies
1.8k
views
Comment: Comment: About Mapping Efficiency of Bisulfite aligners
3.7 years ago by francesca3 ▴ 160
8
votes
3
replies
6.4k
views
Seurat-Merging and integrate
single-cell seurat
updated 3.9 years ago by ▴ 50 • written 3.9 years ago by ▴ 160
0
votes
0
replies
6.4k
views
Comment: Comment: Seurat-Merging and integrate
3.9 years ago by francesca3 ▴ 160
1
vote
3
replies
1.9k
views
TMM normalization and sex effect
edgeR diffbind rnaseq tmm
updated 4.1 years ago by ★ 2.1k • written 4.1 years ago by ▴ 160
0
votes
1
reply
1.9k
views
Comment: Comment: TMM normalization and sex effect
4.1 years ago by francesca3 ▴ 160
0
votes
1
reply
3.4k
views
Comment: Comment: Diffbind3 dba.plotMA error
4.3 years ago by francesca3 ▴ 160
0
votes
0
replies
1.7k
views
Comment: C: Searching for a free alternative to IPA
4.6 years ago by francesca3 ▴ 160
0
votes
2
replies
1.7k
views
Searching for a free alternative to IPA
rna-seq ipa
4.6 years ago by francesca3 ▴ 160
0
votes
1
reply
2.6k
views
Comment: C: Trim_galore with gnu parallel
4.7 years ago by francesca3 ▴ 160
1
vote
3
replies
2.6k
views
Trim_galore with gnu parallel
parallel trim_galore RNA-Seq trim fastq
4.7 years ago by francesca3 ▴ 160
0
votes
1
reply
2.3k
views
Comment: C: how matrix composition influences the final results in diff bind
5.1 years ago by francesca3 ▴ 160
0
votes
1
reply
2.3k
views
Comment: C: how matrix composition influences the final results in diff bind
5.1 years ago by francesca3 ▴ 160
0
votes
1
reply
2.3k
views
Comment: C: how matrix composition influences the final results in diff bind
5.1 years ago by francesca3 ▴ 160
0
votes
0
replies
2.3k
views
Comment: C: how matrix composition influences the final results in diff bind
5.1 years ago by francesca3 ▴ 160
5
votes
9
replies
2.3k
views
how matrix composition influences the final results in diff bind
ChIP-Seq diffbind
updated 5.1 years ago by ★ 2.1k • written 5.1 years ago by ▴ 160
0
votes
2
replies
10k
views
Comment: C: CPM function in EDGER
5.1 years ago by francesca3 ▴ 160
15
votes
6
replies
10k
views
CPM function in EDGER
edgerR RNA-Seq CPM
updated 5.1 years ago by 89k • written 5.1 years ago by ▴ 160
0
votes
0
replies
10k
views
Comment: C: CPM function in EDGER
5.1 years ago by francesca3 ▴ 160
1
vote
0
replies
1.0k
views
Sicer - Peak calling-Filter called peaks based on scores
sicer ChIP-Seq peakcalling
5.3 years ago by francesca3 ▴ 160
6
votes
4
replies
2.3k
views
Extract RPKM values from Diffbind
ChIP-Seq Diffbind RPKM
updated 2.1 years ago by ▴ 260 • written 5.3 years ago by ▴ 160
1
vote
0
replies
2.3k
views
Comment: C: Extract RPKM values from Diffbind
5.3 years ago by francesca3 ▴ 160
2
votes
3
replies
4.5k
views
Missing a row name in Heatmap.2
R ggplots
updated 5.4 years ago by 45k • written 5.4 years ago by ▴ 160
1
vote
3
replies
1.5k
views
Diffbind- results different every time I run it
diffbind software error
updated 5.4 years ago by 56k • written 5.6 years ago by ▴ 160
1
vote
2
replies
1.3k
views
CSAW- functions not present
csaw chipseq ChIP-Seq csaw;
updated 5.6 years ago by 89k • written 5.6 years ago by ▴ 160
0
votes
0
replies
1.5k
views
Comment: C: Diffbind- results different every time I run it
5.6 years ago by francesca3 ▴ 160
2
votes
4
replies
3.0k
views
Diffbind-edgeR or Deseq2
ChIP-Seq
updated 5.6 years ago by 89k • written 5.6 years ago by ▴ 160
5
votes
2
replies
3.1k
views
Answer: C: ChipQC doesn't run
5.6 years ago by francesca3 ▴ 160
0
votes
2
replies
716
views
Tool to link a expression pattern to treatments effects
RNA-Seq
updated 5.7 years ago by 22k • written 5.7 years ago by ▴ 160
3
votes
2
replies
2.5k
views
How to perform PCA analysis
RNA-Seq PCA
updated 5.7 years ago by 89k • written 5.7 years ago by ▴ 160
0
votes
0
replies
1.2k
views
Comment: C: Input data in GAGE Analysis
5.7 years ago by francesca3 ▴ 160
0
votes
1
reply
1.2k
views
Input data in GAGE Analysis
RNA-Seq GAGE
5.7 years ago by francesca3 ▴ 160
0
votes
0
replies
2.3k
views
Comment: C: How to order rows in a dot plot with ggplot2
5.7 years ago by francesca3 ▴ 160
54 results • Page 1 of 2
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