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10
votes
9
replies
4.5k
views
6 follow
CPM or TPM in GSEA analysis
RNA-Seq GSEA
updated 9 weeks ago by ▴ 40 • written 3.0 years ago by ▴ 80
0
votes
1
reply
388
views
Combining RNA and ATAC
Seurat atac single-cell signac rna
updated 8 months ago by • 0 • written 8 months ago by ▴ 80
0
votes
0
replies
377
views
Comment: Comment: standardChromosomes() function not found but its guide yes.
8 months ago by francesca3 ▴ 80
0
votes
1
reply
377
views
Comment: Comment: standardChromosomes() function not found but its guide yes.
8 months ago by francesca3 ▴ 80
0
votes
4
replies
377
views
standardChromosomes() function not found but its guide yes.
Signac single-cell Seurat
8 months ago by francesca3 ▴ 80
0
votes
0
replies
415
views
Comment: Comment: Seurat cell cycle (single cell analysis)
8 months ago by francesca3 ▴ 80
0
votes
2
replies
415
views
Seurat cell cycle (single cell analysis)
single-cell Seurat cycle
8 months ago by francesca3 ▴ 80
0
votes
0
replies
344
views
Comment: Comment: Differential analysis on clusters identified by single-sample UMAP
11 months ago by francesca3 ▴ 80
0
votes
2
replies
344
views
Differential analysis on clusters identified by single-sample UMAP
single-cell Seurat
11 months ago by francesca3 ▴ 80
0
votes
0
replies
1.4k
views
Comment: Comment: Problems with colors in FeaturePlot after integration in Seurat
11 months ago by francesca3 ▴ 80
0
votes
1
reply
1.4k
views
Comment: Comment: Problems with colors in FeaturePlot after integration in Seurat
11 months ago by francesca3 ▴ 80
1
vote
4
replies
1.4k
views
Problems with colors in FeaturePlot after integration in Seurat
single-cell Seurat
11 months ago by francesca3 ▴ 80
0
votes
0
replies
409
views
Comment: Comment: bsmap /methratio/ paired end mode and unpaired aligned reads
11 months ago by francesca3 ▴ 80
2
votes
2
replies
409
views
bsmap /methratio/ paired end mode and unpaired aligned reads
paired methylation bisulfite bsmap alignment
11 months ago by francesca3 ▴ 80
0
votes
0
replies
172
views
How to interpret differential analysis results when comparing / combining three groups.
analysis rnaseq differential diffbind chipseq
11 months ago by francesca3 ▴ 80
0
votes
1
reply
446
views
Comment: Comment: bisulfite methylation alignment rate
12 months ago by francesca3 ▴ 80
1
vote
3
replies
446
views
bisulfite methylation alignment rate
bisulfite methylation bsmap alignment bismark
updated 12 months ago by 102k • written 12 months ago by ▴ 80
0
votes
0
replies
1.0k
views
Comment: Comment: About Mapping Efficiency of Bisulfite aligners
12 months ago by francesca3 ▴ 80
4
votes
3
replies
1.8k
views
Seurat-Merging and integrate
single-cell seurat
updated 14 months ago by ▴ 40 • written 15 months ago by ▴ 80
0
votes
0
replies
1.8k
views
Comment: Comment: Seurat-Merging and integrate
15 months ago by francesca3 ▴ 80
1
vote
3
replies
785
views
TMM normalization and sex effect
edgeR diffbind rnaseq tmm
updated 17 months ago by ★ 1.6k • written 17 months ago by ▴ 80
0
votes
1
reply
785
views
Comment: Comment: TMM normalization and sex effect
17 months ago by francesca3 ▴ 80
0
votes
1
reply
1.6k
views
Comment: Comment: Diffbind3 dba.plotMA error
19 months ago by francesca3 ▴ 80
0
votes
0
replies
628
views
Comment: C: Searching for a free alternative to IPA
23 months ago by francesca3 ▴ 80
0
votes
2
replies
628
views
Searching for a free alternative to IPA
rna-seq ipa
23 months ago by francesca3 ▴ 80
0
votes
1
reply
1.1k
views
Comment: C: Trim_galore with gnu parallel
2.0 years ago by francesca3 ▴ 80
1
vote
3
replies
1.1k
views
Trim_galore with gnu parallel
parallel trim_galore RNA-Seq trim fastq
2.0 years ago by francesca3 ▴ 80
0
votes
1
reply
892
views
Comment: C: how matrix composition influences the final results in diff bind
2.4 years ago by francesca3 ▴ 80
0
votes
1
reply
892
views
Comment: C: how matrix composition influences the final results in diff bind
2.4 years ago by francesca3 ▴ 80
0
votes
1
reply
892
views
Comment: C: how matrix composition influences the final results in diff bind
2.4 years ago by francesca3 ▴ 80
0
votes
0
replies
892
views
Comment: C: how matrix composition influences the final results in diff bind
2.4 years ago by francesca3 ▴ 80
5
votes
9
replies
892
views
how matrix composition influences the final results in diff bind
ChIP-Seq diffbind
updated 2.4 years ago by ★ 1.6k • written 2.4 years ago by ▴ 80
0
votes
2
replies
5.9k
views
Comment: C: CPM function in EDGER
2.4 years ago by francesca3 ▴ 80
13
votes
6
replies
5.9k
views
CPM function in EDGER
edgerR RNA-Seq CPM
updated 2.4 years ago by 68k • written 2.4 years ago by ▴ 80
0
votes
0
replies
5.9k
views
Comment: C: CPM function in EDGER
2.4 years ago by francesca3 ▴ 80
0
votes
0
replies
624
views
Sicer - Peak calling-Filter called peaks based on scores
sicer ChIP-Seq peakcalling
2.6 years ago by francesca3 ▴ 80
2
votes
3
replies
920
views
Extract RPKM values from Diffbind
ChIP-Seq Diffbind RPKM
updated 2.6 years ago by ★ 1.6k • written 2.6 years ago by ▴ 80
0
votes
0
replies
920
views
Comment: C: Extract RPKM values from Diffbind
2.6 years ago by francesca3 ▴ 80
2
votes
3
replies
2.8k
views
Missing a row name in Heatmap.2
R ggplots
updated 2.7 years ago by 37k • written 2.7 years ago by ▴ 80
1
vote
3
replies
938
views
Diffbind- results different every time I run it
diffbind software error
updated 2.8 years ago by 52k • written 2.9 years ago by ▴ 80
1
vote
2
replies
713
views
CSAW- functions not present
csaw chipseq ChIP-Seq csaw;
updated 2.9 years ago by 68k • written 2.9 years ago by ▴ 80
0
votes
0
replies
938
views
Comment: C: Diffbind- results different every time I run it
2.9 years ago by francesca3 ▴ 80
2
votes
4
replies
1.5k
views
Diffbind-edgeR or Deseq2
ChIP-Seq
updated 2.9 years ago by 68k • written 2.9 years ago by ▴ 80
5
votes
2
replies
1.8k
views
Answer: C: ChipQC doesn't run
2.9 years ago by francesca3 ▴ 80
6
votes
3
replies
1.8k
views
ChipQC doesn't run
ChIP-Seq
updated 18 months ago by • 0 • written 2.9 years ago by ▴ 80
0
votes
2
replies
363
views
Tool to link a expression pattern to treatments effects
RNA-Seq
updated 3.0 years ago by 16k • written 3.0 years ago by ▴ 80
3
votes
2
replies
1.2k
views
How to perform PCA analysis
RNA-Seq PCA
updated 3.0 years ago by 84k • written 3.0 years ago by ▴ 80
0
votes
0
replies
680
views
Comment: C: Input data in GAGE Analysis
3.0 years ago by francesca3 ▴ 80
0
votes
1
reply
680
views
Input data in GAGE Analysis
RNA-Seq GAGE
3.0 years ago by francesca3 ▴ 80
0
votes
0
replies
1.2k
views
Comment: C: How to order rows in a dot plot with ggplot2
3.0 years ago by francesca3 ▴ 80
54 results • Page 1 of 2
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