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476
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resequensing of the whole sample or sequencing to X k reads and merging files
RNA-seq sequencing-depth
updated 21 months ago by 44k • written 21 months ago by ▴ 30
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0
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594
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Comment: Comment: Fastq Screen shows many unmapped reads
2.2 years ago by esimonova.me ▴ 30
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2
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594
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Fastq Screen shows many unmapped reads
fastq_screen
2.2 years ago by esimonova.me ▴ 30
0
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0
replies
573
views
conumee - adding bed file instead of sample detailed regions
conumee R rtracklayer
3.0 years ago by esimonova.me ▴ 30
2
votes
1
reply
642
views
Immune repertoire reconstruction from RNA-seq data
TCR-seq
updated 3.1 years ago by ▴ 240 • written 3.1 years ago by ▴ 30
0
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0
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491
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Genome reference with haplotypes
reference haplotypes
3.1 years ago by esimonova.me ▴ 30
0
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1
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646
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Deconvolution/quantification of immune cell types in Macaca Mulatta
RNA-seq deconvolution
updated 3.1 years ago by • 0 • written 3.1 years ago by ▴ 30
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0
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2.6k
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Answer: Answer: Find Information about TCGA samples from GDC data portal
3.3 years ago by esimonova.me ▴ 30
11
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4
replies
3.8k
views
RNASEQ - Mapping to genome or Transcriptome
mapping RNAseq
updated 3.3 years ago by ▴ 590 • written 3.3 years ago by ▴ 30
0
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0
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11k
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Comment: Comment: Matplotlib comprehensive chromosome drawing
3.4 years ago by esimonova.me ▴ 30
0
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1
reply
1.4k
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Comment: Comment: Strand specific library
3.4 years ago by esimonova.me ▴ 30
3
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6
replies
1.4k
views
Strand specific library
htseq
updated 3.4 years ago by 4.1k • written 3.4 years ago by ▴ 30
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0
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1.4k
views
Comment: Comment: Strand specific library
3.4 years ago by esimonova.me ▴ 30
0
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0
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946
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mSINGs - pipeline
MSI
3.5 years ago by esimonova.me ▴ 30
0
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0
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550
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Freebayes - too many variants produced on WES sample
Freebayes
3.6 years ago by esimonova.me ▴ 30
0
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0
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526
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Simulated data or pseudoreplicatesreported in papers
pseudoreplicates SNPs INDELs
3.6 years ago by esimonova.me ▴ 30
0
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0
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554
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plink - generate VCF
plink
3.6 years ago by esimonova.me ▴ 30
0
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1
reply
765
views
Precision of variant calling (INDELs)
INDELs hap.py
updated 3.7 years ago by ▴ 280 • written 3.7 years ago by ▴ 30
0
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0
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544
views
Validation of Bioinformatics pipeline with NA12763
hap.py
updated 21 months ago by 44k • written 3.7 years ago by ▴ 30
0
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0
replies
614
views
GATK VQSR filter
NA12878 VariantRecallibration
3.7 years ago by esimonova.me ▴ 30
0
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1
reply
762
views
Mendelian vs Inherited variants
inherited mendelian
updated 3.7 years ago by ★ 2.9k • written 3.7 years ago by ▴ 30
0
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1
reply
1.1k
views
Effective subsampling of BAMs
BAM sampling
updated 3.8 years ago by 86k • written 3.8 years ago by ▴ 30
0
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1
reply
967
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How many INDELs and SNPs should I expect in vcf file and what the best parameters to filter false positives?
variants WES WGS
updated 3.8 years ago by 24k • written 3.8 years ago by ▴ 30
2
votes
1
reply
946
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BAM FLAG mate unmappedand mate reverse strand
BAM
updated 3.8 years ago by 20k • written 3.8 years ago by ▴ 30
0
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0
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3.8k
views
Answer: A: BED intersects/overlaps output for Venn diagrams - single column
4.2 years ago by esimonova.me ▴ 30
0
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1
reply
771
views
Difference between Amlicon and Enrichment libraries
next-gen
updated 4.2 years ago by 13k • written 4.2 years ago by ▴ 30
0
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0
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816
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Error running Genomic Vis vcf.venn(vcf.files, 'GRCh38', sample.names)
GenomicVis
4.4 years ago by esimonova.me ▴ 30
27 results • Page 1 of 1
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