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654
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resequensing of the whole sample or sequencing to X k reads and merging files
RNA-seq sequencing-depth
updated 2.7 years ago by 45k • written 2.7 years ago by ▴ 30
0
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0
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858
views
Comment: Comment: Fastq Screen shows many unmapped reads
3.1 years ago by esimonova.me ▴ 30
0
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2
replies
858
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Fastq Screen shows many unmapped reads
fastq_screen
3.1 years ago by esimonova.me ▴ 30
0
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0
replies
799
views
conumee - adding bed file instead of sample detailed regions
conumee R rtracklayer
3.9 years ago by esimonova.me ▴ 30
2
votes
1
reply
924
views
Immune repertoire reconstruction from RNA-seq data
TCR-seq
updated 4.0 years ago by ▴ 280 • written 4.0 years ago by ▴ 30
0
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0
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713
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Genome reference with haplotypes
reference haplotypes
4.0 years ago by esimonova.me ▴ 30
0
votes
1
reply
933
views
Deconvolution/quantification of immune cell types in Macaca Mulatta
RNA-seq deconvolution
updated 4.0 years ago by • 0 • written 4.0 years ago by ▴ 30
0
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0
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3.2k
views
Answer: Answer: Find Information about TCGA samples from GDC data portal
4.2 years ago by esimonova.me ▴ 30
11
votes
4
replies
4.9k
views
RNASEQ - Mapping to genome or Transcriptome
mapping RNAseq
updated 4.2 years ago by ▴ 590 • written 4.2 years ago by ▴ 30
0
votes
0
replies
12k
views
Comment: Comment: Matplotlib comprehensive chromosome drawing
4.3 years ago by esimonova.me ▴ 30
0
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1
reply
2.0k
views
Comment: Comment: Strand specific library
4.3 years ago by esimonova.me ▴ 30
3
votes
6
replies
2.0k
views
Strand specific library
htseq
updated 4.3 years ago by 4.2k • written 4.3 years ago by ▴ 30
0
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0
replies
2.0k
views
Comment: Comment: Strand specific library
4.3 years ago by esimonova.me ▴ 30
0
votes
0
replies
1.1k
views
mSINGs - pipeline
MSI
4.4 years ago by esimonova.me ▴ 30
0
votes
0
replies
757
views
Freebayes - too many variants produced on WES sample
Freebayes
4.5 years ago by esimonova.me ▴ 30
0
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0
replies
722
views
Simulated data or pseudoreplicatesreported in papers
pseudoreplicates SNPs INDELs
4.5 years ago by esimonova.me ▴ 30
0
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0
replies
713
views
plink - generate VCF
plink
4.5 years ago by esimonova.me ▴ 30
0
votes
1
reply
1.0k
views
Precision of variant calling (INDELs)
INDELs hap.py
updated 4.6 years ago by ▴ 290 • written 4.6 years ago by ▴ 30
0
votes
0
replies
709
views
Validation of Bioinformatics pipeline with NA12763
hap.py
updated 2.7 years ago by 45k • written 4.6 years ago by ▴ 30
0
votes
0
replies
772
views
GATK VQSR filter
NA12878 VariantRecallibration
4.6 years ago by esimonova.me ▴ 30
0
votes
1
reply
952
views
Mendelian vs Inherited variants
inherited mendelian
updated 4.6 years ago by ★ 3.0k • written 4.6 years ago by ▴ 30
0
votes
1
reply
1.4k
views
Effective subsampling of BAMs
BAM sampling
updated 4.7 years ago by 90k • written 4.7 years ago by ▴ 30
0
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1
reply
1.3k
views
How many INDELs and SNPs should I expect in vcf file and what the best parameters to filter false positives?
variants WES WGS
updated 4.7 years ago by 24k • written 4.7 years ago by ▴ 30
2
votes
1
reply
1.2k
views
BAM FLAG mate unmappedand mate reverse strand
BAM
updated 4.7 years ago by 22k • written 4.7 years ago by ▴ 30
0
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0
replies
4.4k
views
Answer: A: BED intersects/overlaps output for Venn diagrams - single column
5.1 years ago by esimonova.me ▴ 30
0
votes
1
reply
1.1k
views
Difference between Amlicon and Enrichment libraries
next-gen
updated 5.1 years ago by 13k • written 5.1 years ago by ▴ 30
0
votes
0
replies
937
views
Error running Genomic Vis vcf.venn(vcf.files, 'GRCh38', sample.names)
GenomicVis
5.3 years ago by esimonova.me ▴ 30
27 results • Page 1 of 1
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