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0
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0
replies
181
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Comment:
Comment: Fastq Screen shows many unmapped reads
4 months ago by
esimonova.me
▴ 20
0
votes
2
replies
181
views
Fastq Screen shows many unmapped reads
fastq_screen
4 months ago by
esimonova.me
▴ 20
0
votes
0
replies
287
views
conumee - adding bed file instead of sample detailed regions
conumee
R
rtracklayer
13 months ago by
esimonova.me
▴ 20
2
votes
1
reply
353
views
Immune repertoire reconstruction from RNA-seq data
TCR-seq
updated 15 months ago by
theHumanBorch
▴ 160 • written 15 months ago by
esimonova.me
▴ 20
0
votes
0
replies
225
views
Genome reference with haplotypes
reference
haplotypes
15 months ago by
esimonova.me
▴ 20
0
votes
1
reply
344
views
Deconvolution/quantification of immune cell types in Macaca Mulatta
RNA-seq
deconvolution
updated 15 months ago by
İrem
• 0 • written 15 months ago by
esimonova.me
▴ 20
0
votes
0
replies
2.1k
views
Answer:
Answer: Find Information about TCGA samples from GDC data portal
17 months ago by
esimonova.me
▴ 20
8
votes
4
replies
1.6k
views
RNASEQ - Mapping to genome or Transcriptome
mapping
RNAseq
updated 17 months ago by
ponganta
▴ 530 • written 17 months ago by
esimonova.me
▴ 20
0
votes
0
replies
8.3k
views
Comment:
Comment: Matplotlib comprehensive chromosome drawing
18 months ago by
esimonova.me
▴ 20
0
votes
1
reply
835
views
Comment:
Comment: Strand specific library
18 months ago by
esimonova.me
▴ 20
3
votes
6
replies
835
views
Strand specific library
htseq
updated 18 months ago by
benformatics
3.4k • written 18 months ago by
esimonova.me
▴ 20
0
votes
0
replies
835
views
Comment:
Comment: Strand specific library
18 months ago by
esimonova.me
▴ 20
0
votes
0
replies
617
views
mSINGs - pipeline
MSI
19 months ago by
esimonova.me
▴ 20
0
votes
0
replies
296
views
Freebayes - too many variants produced on WES sample
Freebayes
21 months ago by
esimonova.me
▴ 20
0
votes
0
replies
313
views
Simulated data or pseudoreplicatesreported in papers
pseudoreplicates
SNPs
INDELs
21 months ago by
esimonova.me
▴ 20
0
votes
0
replies
335
views
plink - generate VCF
plink
21 months ago by
esimonova.me
▴ 20
0
votes
1
reply
475
views
Precision of variant calling (INDELs)
INDELs
hap.py
updated 22 months ago by
desouzareis.r
▴ 270 • written 22 months ago by
esimonova.me
▴ 20
0
votes
0
replies
324
views
Validation of Bioinformatics pipeline with NA12763
BioinfoPipelineValidation
NA12763
22 months ago by
esimonova.me
▴ 20
0
votes
0
replies
385
views
GATK VQSR filter
NA12878
VariantRecallibration
22 months ago by
esimonova.me
▴ 20
0
votes
1
reply
492
views
Mendelian vs Inherited variants
inherited
mendelian
updated 22 months ago by
German.M.Demidov
★ 2.9k • written 22 months ago by
esimonova.me
▴ 20
0
votes
1
reply
641
views
Effective subsampling of BAMs
BAM
sampling
updated 23 months ago by
ATpoint
68k • written 23 months ago by
esimonova.me
▴ 20
0
votes
1
reply
609
views
How many INDELs and SNPs should I expect in vcf file and what the best parameters to filter false positives?
variants
WES
WGS
updated 23 months ago by
Emily
23k • written 23 months ago by
esimonova.me
▴ 20
2
votes
1
reply
457
views
BAM FLAG mate unmappedand mate reverse strand
BAM
updated 23 months ago by
i.sudbery
16k • written 23 months ago by
esimonova.me
▴ 20
0
votes
0
replies
2.7k
views
Answer:
A: BED intersects/overlaps output for Venn diagrams - single column
2.3 years ago by
esimonova.me
▴ 20
0
votes
1
reply
443
views
Difference between Amlicon and Enrichment libraries
next-gen
updated 2.3 years ago by
JC
13k • written 2.3 years ago by
esimonova.me
▴ 20
0
votes
0
replies
553
views
Error running Genomic Vis vcf.venn(vcf.files, 'GRCh38', sample.names)
GenomicVis
2.5 years ago by
esimonova.me
▴ 20
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