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222
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resequensing of the whole sample or sequencing to X k reads and merging files
RNA-seq sequencing-depth
updated 12 weeks ago by 39k • written 12 weeks ago by ▴ 20
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235
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Comment: Comment: Fastq Screen shows many unmapped reads
7 months ago by esimonova.me ▴ 20
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2
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235
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Fastq Screen shows many unmapped reads
fastq_screen
7 months ago by esimonova.me ▴ 20
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0
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330
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conumee - adding bed file instead of sample detailed regions
conumee R rtracklayer
17 months ago by esimonova.me ▴ 20
2
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1
reply
385
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Immune repertoire reconstruction from RNA-seq data
TCR-seq
updated 18 months ago by ▴ 180 • written 18 months ago by ▴ 20
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0
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258
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Genome reference with haplotypes
reference haplotypes
18 months ago by esimonova.me ▴ 20
0
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1
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368
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Deconvolution/quantification of immune cell types in Macaca Mulatta
RNA-seq deconvolution
updated 18 months ago by • 0 • written 19 months ago by ▴ 20
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2.2k
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Answer: Answer: Find Information about TCGA samples from GDC data portal
20 months ago by esimonova.me ▴ 20
8
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4
replies
1.9k
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RNASEQ - Mapping to genome or Transcriptome
mapping RNAseq
updated 21 months ago by ▴ 590 • written 21 months ago by ▴ 20
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0
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8.7k
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Comment: Comment: Matplotlib comprehensive chromosome drawing
22 months ago by esimonova.me ▴ 20
0
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1
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910
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Comment: Comment: Strand specific library
22 months ago by esimonova.me ▴ 20
3
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6
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910
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Strand specific library
htseq
updated 22 months ago by 3.6k • written 22 months ago by ▴ 20
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0
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910
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Comment: Comment: Strand specific library
22 months ago by esimonova.me ▴ 20
0
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0
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677
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mSINGs - pipeline
MSI
23 months ago by esimonova.me ▴ 20
0
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0
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317
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Freebayes - too many variants produced on WES sample
Freebayes
2.1 years ago by esimonova.me ▴ 20
0
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0
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343
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Simulated data or pseudoreplicatesreported in papers
pseudoreplicates SNPs INDELs
2.1 years ago by esimonova.me ▴ 20
0
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0
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363
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plink - generate VCF
plink
2.1 years ago by esimonova.me ▴ 20
0
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1
reply
522
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Precision of variant calling (INDELs)
INDELs hap.py
updated 2.1 years ago by ▴ 270 • written 2.1 years ago by ▴ 20
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0
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358
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Validation of Bioinformatics pipeline with NA12763
hap.py
updated 9 weeks ago by 39k • written 2.1 years ago by ▴ 20
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0
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418
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GATK VQSR filter
NA12878 VariantRecallibration
2.2 years ago by esimonova.me ▴ 20
0
votes
1
reply
528
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Mendelian vs Inherited variants
inherited mendelian
updated 2.2 years ago by ★ 2.9k • written 2.2 years ago by ▴ 20
0
votes
1
reply
699
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Effective subsampling of BAMs
BAM sampling
updated 2.2 years ago by 72k • written 2.2 years ago by ▴ 20
0
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1
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660
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How many INDELs and SNPs should I expect in vcf file and what the best parameters to filter false positives?
variants WES WGS
updated 2.2 years ago by 23k • written 2.2 years ago by ▴ 20
2
votes
1
reply
555
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BAM FLAG mate unmappedand mate reverse strand
BAM
updated 2.3 years ago by 17k • written 2.3 years ago by ▴ 20
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0
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2.9k
views
Answer: A: BED intersects/overlaps output for Venn diagrams - single column
2.6 years ago by esimonova.me ▴ 20
0
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1
reply
484
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Difference between Amlicon and Enrichment libraries
next-gen
updated 2.6 years ago by 13k • written 2.6 years ago by ▴ 20
0
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0
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602
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Error running Genomic Vis vcf.venn(vcf.files, 'GRCh38', sample.names)
GenomicVis
2.8 years ago by esimonova.me ▴ 20
27 results • Page 1 of 1
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