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resequensing of the whole sample or sequencing to X k reads and merging files
RNA-seq sequencing-depth
updated 2.4 years ago by 45k • written 2.4 years ago by ▴ 30
0
votes
2
replies
748
views
Fastq Screen shows many unmapped reads
fastq_screen
2.8 years ago by esimonova.me ▴ 30
0
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0
replies
709
views
conumee - adding bed file instead of sample detailed regions
conumee R rtracklayer
3.6 years ago by esimonova.me ▴ 30
2
votes
1
reply
789
views
Immune repertoire reconstruction from RNA-seq data
TCR-seq
updated 3.7 years ago by ▴ 270 • written 3.7 years ago by ▴ 30
0
votes
0
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604
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Genome reference with haplotypes
reference haplotypes
3.7 years ago by esimonova.me ▴ 30
0
votes
1
reply
798
views
Deconvolution/quantification of immune cell types in Macaca Mulatta
RNA-seq deconvolution
updated 3.7 years ago by • 0 • written 3.7 years ago by ▴ 30
11
votes
4
replies
4.5k
views
RNASEQ - Mapping to genome or Transcriptome
mapping RNAseq
updated 3.9 years ago by ▴ 590 • written 3.9 years ago by ▴ 30
3
votes
6
replies
1.7k
views
Strand specific library
htseq
updated 4.0 years ago by 4.1k • written 4.0 years ago by ▴ 30
0
votes
0
replies
1.0k
views
mSINGs - pipeline
MSI
4.1 years ago by esimonova.me ▴ 30
0
votes
0
replies
669
views
Freebayes - too many variants produced on WES sample
Freebayes
4.2 years ago by esimonova.me ▴ 30
0
votes
0
replies
641
views
Simulated data or pseudoreplicatesreported in papers
pseudoreplicates SNPs INDELs
4.2 years ago by esimonova.me ▴ 30
0
votes
0
replies
639
views
plink - generate VCF
plink
4.2 years ago by esimonova.me ▴ 30
0
votes
1
reply
920
views
Precision of variant calling (INDELs)
INDELs hap.py
updated 4.3 years ago by ▴ 290 • written 4.3 years ago by ▴ 30
0
votes
0
replies
643
views
Validation of Bioinformatics pipeline with NA12763
hap.py
updated 2.3 years ago by 45k • written 4.3 years ago by ▴ 30
0
votes
0
replies
697
views
GATK VQSR filter
NA12878 VariantRecallibration
4.3 years ago by esimonova.me ▴ 30
0
votes
1
reply
861
views
Mendelian vs Inherited variants
inherited mendelian
updated 4.3 years ago by ★ 3.0k • written 4.3 years ago by ▴ 30
0
votes
1
reply
1.3k
views
Effective subsampling of BAMs
BAM sampling
updated 4.4 years ago by 88k • written 4.4 years ago by ▴ 30
0
votes
1
reply
1.2k
views
How many INDELs and SNPs should I expect in vcf file and what the best parameters to filter false positives?
variants WES WGS
updated 4.4 years ago by 24k • written 4.4 years ago by ▴ 30
2
votes
1
reply
1.1k
views
BAM FLAG mate unmappedand mate reverse strand
BAM
updated 4.4 years ago by 21k • written 4.4 years ago by ▴ 30
0
votes
1
reply
943
views
Difference between Amlicon and Enrichment libraries
next-gen
updated 4.8 years ago by 13k • written 4.8 years ago by ▴ 30
0
votes
0
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887
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Error running Genomic Vis vcf.venn(vcf.files, 'GRCh38', sample.names)
GenomicVis
5.0 years ago by esimonova.me ▴ 30
21 results • Page 1 of 1
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