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402
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resequensing of the whole sample or sequencing to X k reads and merging files
RNA-seq sequencing-depth
updated 14 months ago by 43k • written 14 months ago by ▴ 20
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2
replies
471
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Fastq Screen shows many unmapped reads
fastq_screen
18 months ago by esimonova.me ▴ 20
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0
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494
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conumee - adding bed file instead of sample detailed regions
conumee R rtracklayer
2.3 years ago by esimonova.me ▴ 20
2
votes
1
reply
538
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Immune repertoire reconstruction from RNA-seq data
TCR-seq
updated 2.5 years ago by ▴ 240 • written 2.5 years ago by ▴ 20
0
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0
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417
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Genome reference with haplotypes
reference haplotypes
2.5 years ago by esimonova.me ▴ 20
0
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1
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545
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Deconvolution/quantification of immune cell types in Macaca Mulatta
RNA-seq deconvolution
updated 2.5 years ago by • 0 • written 2.5 years ago by ▴ 20
8
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4
replies
3.0k
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RNASEQ - Mapping to genome or Transcriptome
mapping RNAseq
updated 2.7 years ago by ▴ 590 • written 2.7 years ago by ▴ 20
3
votes
6
replies
1.2k
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Strand specific library
htseq
updated 2.8 years ago by 3.9k • written 2.8 years ago by ▴ 20
0
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0
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857
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mSINGs - pipeline
MSI
2.8 years ago by esimonova.me ▴ 20
0
votes
0
replies
466
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Freebayes - too many variants produced on WES sample
Freebayes
3.0 years ago by esimonova.me ▴ 20
0
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0
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466
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Simulated data or pseudoreplicatesreported in papers
pseudoreplicates SNPs INDELs
3.0 years ago by esimonova.me ▴ 20
0
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0
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500
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plink - generate VCF
plink
3.0 years ago by esimonova.me ▴ 20
0
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1
reply
670
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Precision of variant calling (INDELs)
INDELs hap.py
updated 3.0 years ago by ▴ 280 • written 3.0 years ago by ▴ 20
0
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0
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475
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Validation of Bioinformatics pipeline with NA12763
hap.py
updated 13 months ago by 43k • written 3.1 years ago by ▴ 20
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0
replies
554
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GATK VQSR filter
NA12878 VariantRecallibration
3.1 years ago by esimonova.me ▴ 20
0
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1
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698
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Mendelian vs Inherited variants
inherited mendelian
updated 3.1 years ago by ★ 2.9k • written 3.1 years ago by ▴ 20
0
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1
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964
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Effective subsampling of BAMs
BAM sampling
updated 3.1 years ago by 82k • written 3.1 years ago by ▴ 20
0
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1
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842
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How many INDELs and SNPs should I expect in vcf file and what the best parameters to filter false positives?
variants WES WGS
updated 3.2 years ago by 23k • written 3.2 years ago by ▴ 20
2
votes
1
reply
778
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BAM FLAG mate unmappedand mate reverse strand
BAM
updated 3.2 years ago by 19k • written 3.2 years ago by ▴ 20
0
votes
1
reply
655
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Difference between Amlicon and Enrichment libraries
next-gen
updated 3.5 years ago by 13k • written 3.5 years ago by ▴ 20
0
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0
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749
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Error running Genomic Vis vcf.venn(vcf.files, 'GRCh38', sample.names)
GenomicVis
3.7 years ago by esimonova.me ▴ 20
21 results • Page 1 of 1
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