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resequensing of the whole sample or sequencing to X k reads and merging files
RNA-seq sequencing-depth
updated 25 days ago by 38k • written 26 days ago by ▴ 20
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2
replies
200
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Fastq Screen shows many unmapped reads
fastq_screen
5 months ago by esimonova.me ▴ 20
0
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0
replies
307
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conumee - adding bed file instead of sample detailed regions
conumee R rtracklayer
15 months ago by esimonova.me ▴ 20
2
votes
1
reply
368
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Immune repertoire reconstruction from RNA-seq data
TCR-seq
updated 16 months ago by ▴ 180 • written 16 months ago by ▴ 20
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0
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239
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Genome reference with haplotypes
reference haplotypes
16 months ago by esimonova.me ▴ 20
0
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1
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358
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Deconvolution/quantification of immune cell types in Macaca Mulatta
RNA-seq deconvolution
updated 16 months ago by • 0 • written 17 months ago by ▴ 20
8
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4
replies
1.7k
views
RNASEQ - Mapping to genome or Transcriptome
mapping RNAseq
updated 19 months ago by ▴ 540 • written 19 months ago by ▴ 20
3
votes
6
replies
866
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Strand specific library
htseq
updated 20 months ago by 3.5k • written 20 months ago by ▴ 20
0
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0
replies
655
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mSINGs - pipeline
MSI
21 months ago by esimonova.me ▴ 20
0
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0
replies
308
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Freebayes - too many variants produced on WES sample
Freebayes
23 months ago by esimonova.me ▴ 20
0
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0
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328
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Simulated data or pseudoreplicatesreported in papers
pseudoreplicates SNPs INDELs
23 months ago by esimonova.me ▴ 20
0
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0
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350
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plink - generate VCF
plink
23 months ago by esimonova.me ▴ 20
0
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1
reply
501
views
Precision of variant calling (INDELs)
INDELs hap.py
updated 23 months ago by ▴ 270 • written 23 months ago by ▴ 20
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0
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342
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Validation of Bioinformatics pipeline with NA12763
hap.py
updated 4 days ago by 38k • written 23 months ago by ▴ 20
0
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0
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400
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GATK VQSR filter
NA12878 VariantRecallibration
24 months ago by esimonova.me ▴ 20
0
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1
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514
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Mendelian vs Inherited variants
inherited mendelian
updated 24 months ago by ★ 2.9k • written 24 months ago by ▴ 20
0
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1
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668
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Effective subsampling of BAMs
BAM sampling
updated 2.1 years ago by 70k • written 2.1 years ago by ▴ 20
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1
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623
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How many INDELs and SNPs should I expect in vcf file and what the best parameters to filter false positives?
variants WES WGS
updated 2.1 years ago by 23k • written 2.1 years ago by ▴ 20
2
votes
1
reply
500
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BAM FLAG mate unmappedand mate reverse strand
BAM
updated 2.1 years ago by 16k • written 2.1 years ago by ▴ 20
0
votes
1
reply
462
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Difference between Amlicon and Enrichment libraries
next-gen
updated 2.4 years ago by 13k • written 2.5 years ago by ▴ 20
0
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0
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575
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Error running Genomic Vis vcf.venn(vcf.files, 'GRCh38', sample.names)
GenomicVis
2.6 years ago by esimonova.me ▴ 20
21 results • Page 1 of 1
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