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0
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450
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resequensing of the whole sample or sequencing to X k reads and merging files
RNA-seq sequencing-depth
updated 18 months ago by 44k • written 18 months ago by ▴ 30
0
votes
2
replies
559
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Fastq Screen shows many unmapped reads
fastq_screen
23 months ago by esimonova.me ▴ 30
0
votes
0
replies
549
views
conumee - adding bed file instead of sample detailed regions
conumee R rtracklayer
2.7 years ago by esimonova.me ▴ 30
2
votes
1
reply
601
views
Immune repertoire reconstruction from RNA-seq data
TCR-seq
updated 2.8 years ago by ▴ 240 • written 2.8 years ago by ▴ 30
0
votes
0
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459
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Genome reference with haplotypes
reference haplotypes
2.8 years ago by esimonova.me ▴ 30
0
votes
1
reply
611
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Deconvolution/quantification of immune cell types in Macaca Mulatta
RNA-seq deconvolution
updated 2.9 years ago by • 0 • written 2.9 years ago by ▴ 30
11
votes
4
replies
3.5k
views
RNASEQ - Mapping to genome or Transcriptome
mapping RNAseq
updated 3.1 years ago by ▴ 590 • written 3.1 years ago by ▴ 30
3
votes
6
replies
1.4k
views
Strand specific library
htseq
updated 3.2 years ago by 4.0k • written 3.2 years ago by ▴ 30
0
votes
0
replies
913
views
mSINGs - pipeline
MSI
3.2 years ago by esimonova.me ▴ 30
0
votes
0
replies
523
views
Freebayes - too many variants produced on WES sample
Freebayes
3.4 years ago by esimonova.me ▴ 30
0
votes
0
replies
502
views
Simulated data or pseudoreplicatesreported in papers
pseudoreplicates SNPs INDELs
3.4 years ago by esimonova.me ▴ 30
0
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0
replies
533
views
plink - generate VCF
plink
3.4 years ago by esimonova.me ▴ 30
0
votes
1
reply
734
views
Precision of variant calling (INDELs)
INDELs hap.py
updated 3.4 years ago by ▴ 280 • written 3.4 years ago by ▴ 30
0
votes
0
replies
520
views
Validation of Bioinformatics pipeline with NA12763
hap.py
updated 18 months ago by 44k • written 3.4 years ago by ▴ 30
0
votes
0
replies
587
views
GATK VQSR filter
NA12878 VariantRecallibration
3.5 years ago by esimonova.me ▴ 30
0
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1
reply
743
views
Mendelian vs Inherited variants
inherited mendelian
updated 3.5 years ago by ★ 2.9k • written 3.5 years ago by ▴ 30
0
votes
1
reply
1.1k
views
Effective subsampling of BAMs
BAM sampling
updated 3.5 years ago by 84k • written 3.5 years ago by ▴ 30
0
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1
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928
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How many INDELs and SNPs should I expect in vcf file and what the best parameters to filter false positives?
variants WES WGS
updated 3.5 years ago by 23k • written 3.5 years ago by ▴ 30
2
votes
1
reply
902
views
BAM FLAG mate unmappedand mate reverse strand
BAM
updated 3.6 years ago by 20k • written 3.6 years ago by ▴ 30
0
votes
1
reply
738
views
Difference between Amlicon and Enrichment libraries
next-gen
updated 3.9 years ago by 13k • written 3.9 years ago by ▴ 30
0
votes
0
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792
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Error running Genomic Vis vcf.venn(vcf.files, 'GRCh38', sample.names)
GenomicVis
4.1 years ago by esimonova.me ▴ 30
21 results • Page 1 of 1
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