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Comment: C: Dispersion estimation using DESeq2
3.2 years ago by hpapoli ▴ 140
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1.4k
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Comment: C: Dispersion estimation using DESeq2
3.2 years ago by hpapoli ▴ 140
2
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4
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1.4k
views
Dispersion estimation using DESeq2
RNA-Seq deseq2
updated 3.2 years ago by 82k • written 3.2 years ago by ▴ 140
0
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2
replies
1.9k
views
Transition and transversion as a quality of SNP call set
transition SNP
updated 5.7 years ago by 5.7k • written 5.7 years ago by ▴ 140
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1
reply
2.9k
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Comment: C: Calculate average mapping quality at a position
5.7 years ago by hpapoli ▴ 140
8
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8
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2.9k
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Calculate average mapping quality at a position
mapping quality mpileup
updated 5.7 years ago by ★ 2.9k • written 5.7 years ago by ▴ 140
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0
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2.9k
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Comment: C: Calculate average mapping quality at a position
5.7 years ago by hpapoli ▴ 140
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1
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3.7k
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Comment: C: TLEN sam format
5.7 years ago by hpapoli ▴ 140
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1
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3.7k
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Comment: C: TLEN sam format
5.7 years ago by hpapoli ▴ 140
6
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5
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3.7k
views
TLEN sam format
samtools alignment
updated 5.7 years ago by ★ 2.2k • written 5.7 years ago by ▴ 140
0
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1
reply
2.2k
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mpileup mapping quality
samtools MAPQ
updated 5.7 years ago by 87k • written 5.7 years ago by ▴ 140
1
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2
replies
2.1k
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Mapping scaffolds to chromosomes
lastz assembly
updated 5.7 years ago by ▴ 170 • written 5.7 years ago by ▴ 140
1
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0
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1.4k
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scaffold to chromosome in vcf
vcf
6.0 years ago by hpapoli ▴ 140
1
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3
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2.7k
views
Replacing SNP positions with IUPAC code in FASTA
SNP fasta iupac
updated 23 months ago by 43k • written 9.1 years ago by ▴ 140
4
votes
2
replies
7.3k
views
Merging multiple vcf files into one
vcf vcftools
updated 7.8 years ago by 161k • written 7.8 years ago by ▴ 140
1
vote
1
reply
2.1k
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SNP file preparation for genotyping
genotyping
updated 23 months ago by 43k • written 9.1 years ago by ▴ 140
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0
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2.7k
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Comment: C: Replacing SNP positions with IUPAC code in FASTA
9.1 years ago by hpapoli ▴ 140
0
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1
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2.7k
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Comment: C: Replacing SNP positions with IUPAC code in FASTA
9.1 years ago by hpapoli ▴ 140
4
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0
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6.7k
views
Answer: A: intersecting bed and vcf files
9.3 years ago by hpapoli ▴ 140
6
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1
reply
6.7k
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intersecting bed and vcf files
intersectBed
9.3 years ago by hpapoli ▴ 140
0
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3
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3.6k
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intersecting bed and vcf files for polyploid samples
vcftools intersectBed
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 140
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0
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3.6k
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Comment: C: intersecting bed and vcf files for polyploid samples
9.3 years ago by hpapoli ▴ 140
0
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0
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2.8k
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Comment: C: Changing the bam header
9.3 years ago by hpapoli ▴ 140
0
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1
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2.8k
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Comment: C: Changing the bam header
9.3 years ago by hpapoli ▴ 140
1
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5
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2.8k
views
Changing the bam header
bam
9.3 years ago by hpapoli ▴ 140
0
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0
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2.5k
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Varscan for SNP calling from pooled RNA seq data
RNA-Seq varscan SNP
9.3 years ago by hpapoli ▴ 140
0
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2
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11k
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Comment: C: Removing Duplicates From Rna-Seq Data
11.1 years ago by hpapoli ▴ 140
17
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5
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11k
views
Removing Duplicates From Rna-Seq Data
rna-seq
updated 11.1 years ago by 12k • written 11.1 years ago by ▴ 140
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