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4
votes
1
reply
678
views
Discrepency in assembly sizes
Pacbio assembly Kmer
updated 4 months ago by ★ 1.8k • written 4 months ago by ▴ 170
0
votes
1
reply
1.7k
views
Comment: Comment: Using BBtools to remove polyGs in Illumina data
12 months ago by hpapoli ▴ 170
0
votes
1
reply
1.7k
views
Comment: Comment: Using BBtools to remove polyGs in Illumina data
12 months ago by hpapoli ▴ 170
6
votes
6
replies
1.7k
views
Using BBtools to remove polyGs in Illumina data
bbtools
updated 12 months ago by 20k • written 12 months ago by ▴ 170
0
votes
1
reply
1.0k
views
Removing conda environment created in a snakemake workflow
snakemake
updated 12 months ago by ▴ 530 • written 12 months ago by ▴ 170
2
votes
1
reply
808
views
Filtering Fastq based on GC content
fastq
updated 12 months ago by 154k • written 12 months ago by ▴ 170
0
votes
0
replies
706
views
Comment: Comment: GenomicsDBImport with sample map in snakemake
12 months ago by hpapoli ▴ 170
0
votes
2
replies
706
views
GenomicsDBImport with sample map in snakemake
snakemake
12 months ago by hpapoli ▴ 170
0
votes
0
replies
886
views
Comment: Comment: index sequence in fastq header
12 months ago by hpapoli ▴ 170
0
votes
1
reply
935
views
Comment: Comment: Build RG information for BWA
12 months ago by hpapoli ▴ 170
2
votes
2
replies
886
views
index sequence in fastq header
fastq
12 months ago by hpapoli ▴ 170
0
votes
3
replies
935
views
Build RG information for BWA
bwa
updated 12 months ago by 154k • written 12 months ago by ▴ 170
0
votes
1
reply
2.4k
views
Comment: Comment: Snakemake and conda directory structure
12 months ago by hpapoli ▴ 170
0
votes
1
reply
2.4k
views
Comment: Comment: Snakemake and conda directory structure
12 months ago by hpapoli ▴ 170
4
votes
6
replies
2.4k
views
Snakemake and conda directory structure
management workflow snakemake conda
updated 12 months ago by 56k • written 12 months ago by ▴ 170
0
votes
0
replies
1.0k
views
Comment: Comment: Output checks during Snakemake pipeline
13 months ago by hpapoli ▴ 170
3
votes
4
replies
1.0k
views
Output checks during Snakemake pipeline
workflow-management snakemake
13 months ago by hpapoli ▴ 170
0
votes
0
replies
2.9k
views
Comment: C: Dispersion estimation using DESeq2
4.7 years ago by hpapoli ▴ 170
0
votes
1
reply
2.9k
views
Comment: C: Dispersion estimation using DESeq2
4.7 years ago by hpapoli ▴ 170
2
votes
4
replies
2.9k
views
Dispersion estimation using DESeq2
RNA-Seq deseq2
updated 4.7 years ago by 89k • written 4.7 years ago by ▴ 170
0
votes
2
replies
2.3k
views
Transition and transversion as a quality of SNP call set
transition SNP
updated 7.1 years ago by 5.8k • written 7.1 years ago by ▴ 170
0
votes
1
reply
3.7k
views
Comment: C: Calculate average mapping quality at a position
7.2 years ago by hpapoli ▴ 170
8
votes
8
replies
3.7k
views
Calculate average mapping quality at a position
mapping quality mpileup
updated 7.2 years ago by ★ 2.9k • written 7.2 years ago by ▴ 170
0
votes
0
replies
3.7k
views
Comment: C: Calculate average mapping quality at a position
7.2 years ago by hpapoli ▴ 170
0
votes
1
reply
4.7k
views
Comment: C: TLEN sam format
7.2 years ago by hpapoli ▴ 170
0
votes
1
reply
4.7k
views
Comment: C: TLEN sam format
7.2 years ago by hpapoli ▴ 170
6
votes
5
replies
4.7k
views
TLEN sam format
samtools alignment
updated 7.2 years ago by ★ 2.3k • written 7.2 years ago by ▴ 170
0
votes
1
reply
2.7k
views
mpileup mapping quality
samtools MAPQ
updated 7.2 years ago by 89k • written 7.2 years ago by ▴ 170
1
vote
2
replies
2.6k
views
Mapping scaffolds to chromosomes
lastz assembly
updated 7.2 years ago by ▴ 170 • written 7.2 years ago by ▴ 170
1
vote
0
replies
1.7k
views
scaffold to chromosome in vcf
vcf
7.4 years ago by hpapoli ▴ 170
1
vote
3
replies
3.1k
views
Replacing SNP positions with IUPAC code in FASTA
SNP fasta iupac
updated 3.4 years ago by 45k • written 10.5 years ago by ▴ 170
4
votes
2
replies
7.8k
views
Merging multiple vcf files into one
vcf vcftools
updated 9.3 years ago by 166k • written 9.3 years ago by ▴ 170
1
vote
1
reply
2.4k
views
SNP file preparation for genotyping
genotyping
updated 3.4 years ago by 45k • written 10.6 years ago by ▴ 170
0
votes
0
replies
3.1k
views
Comment: C: Replacing SNP positions with IUPAC code in FASTA
10.5 years ago by hpapoli ▴ 170
0
votes
1
reply
3.1k
views
Comment: C: Replacing SNP positions with IUPAC code in FASTA
10.5 years ago by hpapoli ▴ 170
6
votes
1
reply
7.1k
views
intersecting bed and vcf files
intersectBed
10.7 years ago by hpapoli ▴ 170
4
votes
0
replies
7.1k
views
Answer: A: intersecting bed and vcf files
10.7 years ago by hpapoli ▴ 170
0
votes
3
replies
4.1k
views
intersecting bed and vcf files for polyploid samples
vcftools intersectBed
updated 3.5 years ago by 45k • written 10.7 years ago by ▴ 170
0
votes
0
replies
4.1k
views
Comment: C: intersecting bed and vcf files for polyploid samples
10.7 years ago by hpapoli ▴ 170
0
votes
0
replies
3.4k
views
Comment: C: Changing the bam header
10.7 years ago by hpapoli ▴ 170
0
votes
1
reply
3.4k
views
Comment: C: Changing the bam header
10.7 years ago by hpapoli ▴ 170
1
vote
5
replies
3.4k
views
Changing the bam header
bam
10.7 years ago by hpapoli ▴ 170
0
votes
0
replies
2.7k
views
Varscan for SNP calling from pooled RNA seq data
RNA-Seq varscan SNP
10.7 years ago by hpapoli ▴ 170
0
votes
2
replies
13k
views
Comment: C: Removing Duplicates From Rna-Seq Data
12.6 years ago by hpapoli ▴ 170
17
votes
5
replies
13k
views
Removing Duplicates From Rna-Seq Data
rna-seq
updated 12.6 years ago by 12k • written 12.6 years ago by ▴ 170
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