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comments
0
votes
1
reply
634
views
Comment:
Comment: Using BBtools to remove polyGs in Illumina data
3 months ago by
hpapoli
▴ 150
0
votes
1
reply
634
views
Comment:
Comment: Using BBtools to remove polyGs in Illumina data
3 months ago by
hpapoli
▴ 150
6
votes
6
replies
634
views
Using BBtools to remove polyGs in Illumina data
bbtools
updated 3 months ago by
Brian Bushnell
20k • written 3 months ago by
hpapoli
▴ 150
0
votes
1
reply
389
views
Removing conda environment created in a snakemake workflow
snakemake
updated 3 months ago by
DBScan
▴ 450 • written 3 months ago by
hpapoli
▴ 150
2
votes
1
reply
357
views
Filtering Fastq based on GC content
fastq
updated 3 months ago by
GenoMax
148k • written 3 months ago by
hpapoli
▴ 150
0
votes
0
replies
296
views
Comment:
Comment: GenomicsDBImport with sample map in snakemake
3 months ago by
hpapoli
▴ 150
0
votes
2
replies
296
views
GenomicsDBImport with sample map in snakemake
snakemake
3 months ago by
hpapoli
▴ 150
0
votes
0
replies
473
views
Comment:
Comment: index sequence in fastq header
4 months ago by
hpapoli
▴ 150
0
votes
1
reply
489
views
Comment:
Comment: Build RG information for BWA
4 months ago by
hpapoli
▴ 150
2
votes
2
replies
473
views
index sequence in fastq header
fastq
4 months ago by
hpapoli
▴ 150
0
votes
3
replies
489
views
Build RG information for BWA
bwa
updated 4 months ago by
GenoMax
148k • written 4 months ago by
hpapoli
▴ 150
0
votes
1
reply
775
views
Comment:
Comment: Snakemake and conda directory structure
4 months ago by
hpapoli
▴ 150
0
votes
1
reply
775
views
Comment:
Comment: Snakemake and conda directory structure
4 months ago by
hpapoli
▴ 150
4
votes
6
replies
775
views
Snakemake and conda directory structure
management
workflow
snakemake
conda
updated 4 months ago by
Michael
55k • written 4 months ago by
hpapoli
▴ 150
0
votes
0
replies
500
views
Comment:
Comment: Output checks during Snakemake pipeline
4 months ago by
hpapoli
▴ 150
3
votes
4
replies
500
views
Output checks during Snakemake pipeline
workflow-management
snakemake
4 months ago by
hpapoli
▴ 150
0
votes
0
replies
2.0k
views
Comment:
C: Dispersion estimation using DESeq2
4.0 years ago by
hpapoli
▴ 150
0
votes
1
reply
2.0k
views
Comment:
C: Dispersion estimation using DESeq2
4.0 years ago by
hpapoli
▴ 150
2
votes
4
replies
2.0k
views
Dispersion estimation using DESeq2
RNA-Seq
deseq2
updated 4.0 years ago by
ATpoint
86k • written 4.0 years ago by
hpapoli
▴ 150
0
votes
2
replies
2.0k
views
Transition and transversion as a quality of SNP call set
transition
SNP
updated 6.4 years ago by
Santosh Anand
5.8k • written 6.4 years ago by
hpapoli
▴ 150
0
votes
1
reply
3.1k
views
Comment:
C: Calculate average mapping quality at a position
6.5 years ago by
hpapoli
▴ 150
8
votes
8
replies
3.1k
views
Calculate average mapping quality at a position
mapping quality
mpileup
updated 6.5 years ago by
Gabriel R.
★ 2.9k • written 6.5 years ago by
hpapoli
▴ 150
0
votes
0
replies
3.1k
views
Comment:
C: Calculate average mapping quality at a position
6.5 years ago by
hpapoli
▴ 150
0
votes
1
reply
4.1k
views
Comment:
C: TLEN sam format
6.5 years ago by
hpapoli
▴ 150
0
votes
1
reply
4.1k
views
Comment:
C: TLEN sam format
6.5 years ago by
hpapoli
▴ 150
6
votes
5
replies
4.1k
views
TLEN sam format
samtools
alignment
updated 6.5 years ago by
Amitm
★ 2.3k • written 6.5 years ago by
hpapoli
▴ 150
0
votes
1
reply
2.4k
views
mpileup mapping quality
samtools
MAPQ
updated 6.5 years ago by
Kevin Blighe
88k • written 6.5 years ago by
hpapoli
▴ 150
1
vote
2
replies
2.3k
views
Mapping scaffolds to chromosomes
lastz
assembly
updated 6.5 years ago by
FGV
▴ 170 • written 6.5 years ago by
hpapoli
▴ 150
1
vote
0
replies
1.5k
views
scaffold to chromosome in vcf
vcf
6.7 years ago by
hpapoli
▴ 150
1
vote
3
replies
2.8k
views
Replacing SNP positions with IUPAC code in FASTA
SNP
fasta
iupac
updated 2.6 years ago by
Ram
44k • written 9.8 years ago by
hpapoli
▴ 150
4
votes
2
replies
7.5k
views
Merging multiple vcf files into one
vcf
vcftools
updated 8.6 years ago by
Pierre Lindenbaum
165k • written 8.6 years ago by
hpapoli
▴ 150
1
vote
1
reply
2.2k
views
SNP file preparation for genotyping
genotyping
updated 2.7 years ago by
Ram
44k • written 9.9 years ago by
hpapoli
▴ 150
0
votes
0
replies
2.8k
views
Comment:
C: Replacing SNP positions with IUPAC code in FASTA
9.8 years ago by
hpapoli
▴ 150
0
votes
1
reply
2.8k
views
Comment:
C: Replacing SNP positions with IUPAC code in FASTA
9.8 years ago by
hpapoli
▴ 150
6
votes
1
reply
6.9k
views
intersecting bed and vcf files
intersectBed
10.0 years ago by
hpapoli
▴ 150
4
votes
0
replies
6.9k
views
Answer:
A: intersecting bed and vcf files
10.0 years ago by
hpapoli
▴ 150
0
votes
3
replies
3.8k
views
intersecting bed and vcf files for polyploid samples
vcftools
intersectBed
updated 2.8 years ago by
Ram
44k • written 10.0 years ago by
hpapoli
▴ 150
0
votes
0
replies
3.8k
views
Comment:
C: intersecting bed and vcf files for polyploid samples
10.0 years ago by
hpapoli
▴ 150
0
votes
0
replies
3.0k
views
Comment:
C: Changing the bam header
10.0 years ago by
hpapoli
▴ 150
0
votes
1
reply
3.0k
views
Comment:
C: Changing the bam header
10.0 years ago by
hpapoli
▴ 150
1
vote
5
replies
3.0k
views
Changing the bam header
bam
10.0 years ago by
hpapoli
▴ 150
0
votes
0
replies
2.6k
views
Varscan for SNP calling from pooled RNA seq data
RNA-Seq
varscan
SNP
10.0 years ago by
hpapoli
▴ 150
0
votes
2
replies
12k
views
Comment:
C: Removing Duplicates From Rna-Seq Data
11.9 years ago by
hpapoli
▴ 150
17
votes
5
replies
12k
views
Removing Duplicates From Rna-Seq Data
rna-seq
updated 11.9 years ago by
Ashutosh Pandey
12k • written 11.9 years ago by
hpapoli
▴ 150
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