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4
votes
1
reply
790
views
Discrepency in assembly sizes
Pacbio assembly Kmer
updated 5 months ago by ★ 1.8k • written 6 months ago by ▴ 170
0
votes
1
reply
1.9k
views
Comment: Comment: Using BBtools to remove polyGs in Illumina data
13 months ago by hpapoli ▴ 170
0
votes
1
reply
1.9k
views
Comment: Comment: Using BBtools to remove polyGs in Illumina data
13 months ago by hpapoli ▴ 170
6
votes
6
replies
1.9k
views
Using BBtools to remove polyGs in Illumina data
bbtools
updated 13 months ago by 20k • written 13 months ago by ▴ 170
0
votes
1
reply
1.1k
views
Removing conda environment created in a snakemake workflow
snakemake
updated 14 months ago by ▴ 530 • written 14 months ago by ▴ 170
2
votes
1
reply
873
views
Filtering Fastq based on GC content
fastq
updated 14 months ago by 154k • written 14 months ago by ▴ 170
0
votes
0
replies
812
views
Comment: Comment: GenomicsDBImport with sample map in snakemake
14 months ago by hpapoli ▴ 170
0
votes
2
replies
812
views
GenomicsDBImport with sample map in snakemake
snakemake
14 months ago by hpapoli ▴ 170
0
votes
0
replies
994
views
Comment: Comment: index sequence in fastq header
14 months ago by hpapoli ▴ 170
0
votes
1
reply
1.0k
views
Comment: Comment: Build RG information for BWA
14 months ago by hpapoli ▴ 170
2
votes
2
replies
994
views
index sequence in fastq header
fastq
14 months ago by hpapoli ▴ 170
0
votes
3
replies
1.0k
views
Build RG information for BWA
bwa
updated 14 months ago by 154k • written 14 months ago by ▴ 170
0
votes
1
reply
2.9k
views
Comment: Comment: Snakemake and conda directory structure
14 months ago by hpapoli ▴ 170
0
votes
1
reply
2.9k
views
Comment: Comment: Snakemake and conda directory structure
14 months ago by hpapoli ▴ 170
4
votes
6
replies
2.9k
views
Snakemake and conda directory structure
management workflow snakemake conda
updated 14 months ago by 56k • written 14 months ago by ▴ 170
0
votes
0
replies
1.2k
views
Comment: Comment: Output checks during Snakemake pipeline
14 months ago by hpapoli ▴ 170
3
votes
4
replies
1.2k
views
Output checks during Snakemake pipeline
workflow-management snakemake
14 months ago by hpapoli ▴ 170
0
votes
0
replies
3.1k
views
Comment: C: Dispersion estimation using DESeq2
4.8 years ago by hpapoli ▴ 170
0
votes
1
reply
3.1k
views
Comment: C: Dispersion estimation using DESeq2
4.8 years ago by hpapoli ▴ 170
2
votes
4
replies
3.1k
views
Dispersion estimation using DESeq2
RNA-Seq deseq2
updated 4.8 years ago by 90k • written 4.8 years ago by ▴ 170
0
votes
2
replies
2.4k
views
Transition and transversion as a quality of SNP call set
transition SNP
updated 7.3 years ago by 5.8k • written 7.3 years ago by ▴ 170
0
votes
1
reply
3.9k
views
Comment: C: Calculate average mapping quality at a position
7.3 years ago by hpapoli ▴ 170
8
votes
8
replies
3.9k
views
Calculate average mapping quality at a position
mapping quality mpileup
updated 7.3 years ago by ★ 2.9k • written 7.3 years ago by ▴ 170
0
votes
0
replies
3.9k
views
Comment: C: Calculate average mapping quality at a position
7.3 years ago by hpapoli ▴ 170
0
votes
1
reply
4.8k
views
Comment: C: TLEN sam format
7.3 years ago by hpapoli ▴ 170
0
votes
1
reply
4.8k
views
Comment: C: TLEN sam format
7.3 years ago by hpapoli ▴ 170
6
votes
5
replies
4.8k
views
TLEN sam format
samtools alignment
updated 7.3 years ago by ★ 2.3k • written 7.3 years ago by ▴ 170
0
votes
1
reply
2.8k
views
mpileup mapping quality
samtools MAPQ
updated 7.3 years ago by ★ 90k • written 7.3 years ago by ▴ 170
1
vote
2
replies
2.7k
views
Mapping scaffolds to chromosomes
lastz assembly
updated 7.3 years ago by ▴ 170 • written 7.3 years ago by ▴ 170
1
vote
0
replies
1.7k
views
scaffold to chromosome in vcf
vcf
7.6 years ago by hpapoli ▴ 170
1
vote
3
replies
3.2k
views
Replacing SNP positions with IUPAC code in FASTA
SNP fasta iupac
updated 3.5 years ago by 45k • written 10.7 years ago by ▴ 170
4
votes
2
replies
7.9k
views
Merging multiple vcf files into one
vcf vcftools
updated 9.4 years ago by 166k • written 9.4 years ago by ▴ 170
1
vote
1
reply
2.5k
views
SNP file preparation for genotyping
genotyping
updated 3.5 years ago by 45k • written 10.7 years ago by ▴ 170
0
votes
0
replies
3.2k
views
Comment: C: Replacing SNP positions with IUPAC code in FASTA
10.7 years ago by hpapoli ▴ 170
0
votes
1
reply
3.2k
views
Comment: C: Replacing SNP positions with IUPAC code in FASTA
10.7 years ago by hpapoli ▴ 170
4
votes
0
replies
7.2k
views
Answer: A: intersecting bed and vcf files
10.9 years ago by hpapoli ▴ 170
6
votes
1
reply
7.2k
views
intersecting bed and vcf files
intersectBed
10.9 years ago by hpapoli ▴ 170
0
votes
3
replies
4.2k
views
intersecting bed and vcf files for polyploid samples
vcftools intersectBed
updated 3.7 years ago by 45k • written 10.9 years ago by ▴ 170
0
votes
0
replies
4.2k
views
Comment: C: intersecting bed and vcf files for polyploid samples
10.9 years ago by hpapoli ▴ 170
0
votes
0
replies
3.5k
views
Comment: C: Changing the bam header
10.9 years ago by hpapoli ▴ 170
0
votes
1
reply
3.5k
views
Comment: C: Changing the bam header
10.9 years ago by hpapoli ▴ 170
1
vote
5
replies
3.5k
views
Changing the bam header
bam
10.9 years ago by hpapoli ▴ 170
0
votes
0
replies
2.8k
views
Varscan for SNP calling from pooled RNA seq data
RNA-Seq varscan SNP
10.9 years ago by hpapoli ▴ 170
0
votes
2
replies
13k
views
Comment: C: Removing Duplicates From Rna-Seq Data
12.7 years ago by hpapoli ▴ 170
17
votes
5
replies
13k
views
Removing Duplicates From Rna-Seq Data
rna-seq
updated 12.7 years ago by 12k • written 12.7 years ago by ▴ 170
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