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Showing :
questions
2
votes
4
replies
1.4k
views
Dispersion estimation using DESeq2
RNA-Seq
deseq2
updated 3.2 years ago by
ATpoint
82k • written 3.2 years ago by
hpapoli
▴ 140
0
votes
2
replies
1.9k
views
Transition and transversion as a quality of SNP call set
transition
SNP
updated 5.7 years ago by
Santosh Anand
5.7k • written 5.7 years ago by
hpapoli
▴ 140
8
votes
8
replies
2.9k
views
Calculate average mapping quality at a position
mapping quality
mpileup
updated 5.7 years ago by
Gabriel R.
★ 2.9k • written 5.7 years ago by
hpapoli
▴ 140
6
votes
5
replies
3.7k
views
TLEN sam format
samtools
alignment
updated 5.7 years ago by
Amitm
★ 2.2k • written 5.7 years ago by
hpapoli
▴ 140
0
votes
1
reply
2.2k
views
mpileup mapping quality
samtools
MAPQ
updated 5.7 years ago by
Kevin Blighe
87k • written 5.7 years ago by
hpapoli
▴ 140
1
vote
2
replies
2.1k
views
Mapping scaffolds to chromosomes
lastz
assembly
updated 5.7 years ago by
FGV
▴ 170 • written 5.7 years ago by
hpapoli
▴ 140
1
vote
0
replies
1.4k
views
scaffold to chromosome in vcf
vcf
6.0 years ago by
hpapoli
▴ 140
1
vote
3
replies
2.7k
views
Replacing SNP positions with IUPAC code in FASTA
SNP
fasta
iupac
updated 23 months ago by
Ram
43k • written 9.1 years ago by
hpapoli
▴ 140
4
votes
2
replies
7.3k
views
Merging multiple vcf files into one
vcf
vcftools
updated 7.8 years ago by
Pierre Lindenbaum
161k • written 7.8 years ago by
hpapoli
▴ 140
1
vote
1
reply
2.1k
views
SNP file preparation for genotyping
genotyping
updated 23 months ago by
Ram
43k • written 9.1 years ago by
hpapoli
▴ 140
6
votes
1
reply
6.7k
views
intersecting bed and vcf files
intersectBed
9.3 years ago by
hpapoli
▴ 140
0
votes
3
replies
3.6k
views
intersecting bed and vcf files for polyploid samples
vcftools
intersectBed
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
hpapoli
▴ 140
1
vote
5
replies
2.8k
views
Changing the bam header
bam
9.3 years ago by
hpapoli
▴ 140
0
votes
0
replies
2.5k
views
Varscan for SNP calling from pooled RNA seq data
RNA-Seq
varscan
SNP
9.3 years ago by
hpapoli
▴ 140
17
votes
5
replies
11k
views
Removing Duplicates From Rna-Seq Data
rna-seq
updated 11.1 years ago by
Ashutosh Pandey
12k • written 11.1 years ago by
hpapoli
▴ 140
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