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19
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14
replies
86k
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10 follow
BLAST Database error: No alias or index file found for nucleotide database
blast blastn sift makeblastdb
updated 7 months ago by • 0 • written 9.5 years ago by ▴ 320
6
votes
5
replies
8.3k
views
Find Sequences In Fasta File From List Of Id'S
biopython bioperl
updated 6.2 years ago by • 0 • written 11.1 years ago by ▴ 320
9
votes
6
replies
6.2k
views
Pyfasta Split By Header
python
updated 6.3 years ago by ▴ 200 • written 10.5 years ago by ▴ 320
8
votes
7
replies
13k
views
Trying To Run Psipred But Failing To Use Blastpgp
blast+
updated 6.6 years ago by • 0 • written 11.0 years ago by ▴ 320
5
votes
3
replies
11k
views
Convert SNPs from GrCh38 to 37
SNP grch38 grch37 mapping
updated 6.6 years ago by ★ 4.9k • written 6.6 years ago by ▴ 320
0
votes
2
replies
1.9k
views
merging humsavar dataset with UniprotKB human variation
SNP uniprot ensembl swissprot annovar
updated 6.7 years ago by ▴ 40 • written 6.7 years ago by ▴ 320
1
vote
1
reply
2.1k
views
Any Ideas To Increase Hmm Classification Accuracy Of Two Groups Of Proteins?
protein hmm
updated 7.5 years ago by 20 • written 10.6 years ago by ▴ 320
1
vote
2
replies
2.0k
views
drug response variant datasets
snp drug response variant biobase
updated 7.5 years ago by ▴ 310 • written 7.6 years ago by ▴ 320
2
votes
2
replies
2.0k
views
chromosomal locations of snps in humvar variant set
snp variation humvar uniprot
updated 8.0 years ago by ★ 2.4k • written 8.0 years ago by ▴ 320
2
votes
1
reply
2.4k
views
how can I obtain benign / neutral snps?
snp annovar dbnfsp dbsnp mysql
updated 8.0 years ago by 47k • written 8.1 years ago by ▴ 320
3
votes
4
replies
4.4k
views
Multiple annotations using annovar?
annovar annotation variant
updated 8.1 years ago by 13k • written 8.1 years ago by ▴ 320
3
votes
2
replies
1.8k
views
--maf_exac flag not found in VEP77
VEP variant effect predictor exac
updated 8.2 years ago by 23k • written 8.2 years ago by ▴ 320
0
votes
0
replies
2.4k
views
using gromacs to run molecular dynamic simulation of SNP
gromacs molecular-dynamics SNP md
updated 21 months ago by 43k • written 8.3 years ago by ▴ 320
2
votes
3
replies
3.2k
views
download protein sequences form uniprot that do not contain ambiguous amino acids
uniprot protein
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 320
0
votes
2
replies
2.6k
views
determine reading frame of snp
SNP
updated 2.5 years ago by 43k • written 9.8 years ago by ▴ 320
20
votes
17
replies
5.4k
views
Is it possible to download a random set of proteins? (fasta files)
protein pdb swissprot uniprot pfam
updated 2.5 years ago by 43k • written 9.8 years ago by ▴ 320
5
votes
2
replies
4.2k
views
get protein sequence from ID
SNP sequence protein gene
updated 24 months ago by 43k • written 9.2 years ago by ▴ 320
1
vote
2
replies
1.9k
views
extract/download graphs from VEP summary page?
SNP VEP ensembl
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 320
0
votes
0
replies
1.9k
views
output features calculation from various SNP predictor programs
SNP grantham polyphen SIFT
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 320
1
vote
3
replies
3.1k
views
How Long Does Running Psipred Take ~ 600 Sequences In A Fasta File
fasta
updated 9.5 years ago by • 0 • written 11.0 years ago by ▴ 320
2
votes
4
replies
2.2k
views
SNP amino acid position from chromStart
SNP ucsc
updated 2.3 years ago by 43k • written 9.5 years ago by ▴ 320
8
votes
9
replies
3.1k
views
SIFT ncbi executables setup incorrectly?
blast sift SNP
updated 2.3 years ago by 43k • written 9.5 years ago by ▴ 320
1
vote
0
replies
2.3k
views
segmentation fault with SIFT standalone
SIFT blast
updated 3.1 years ago by 43k • written 9.5 years ago by ▴ 320
3
votes
4
replies
1.9k
views
Why does dbsnp Gene View show far less snp ids than the entrez query?
SNP dbsnp
updated 2.5 years ago by 43k • written 9.8 years ago by ▴ 320
3
votes
2
replies
2.3k
views
how can I combine uniprot's random and limit functionality?
uniprot
updated 2.5 years ago by 43k • written 9.8 years ago by ▴ 320
6
votes
3
replies
4.0k
views
multithreading in psiblast
psiblast
updated 2.5 years ago by 43k • written 9.9 years ago by ▴ 320
0
votes
0
replies
2.3k
views
How To Use The Biopython 'Protein_Scale' Method?
biopython
updated 10.4 years ago by 20 • written 11.1 years ago by ▴ 320
3
votes
5
replies
3.1k
views
Biopython Protparam
protein analysis
updated 22 months ago by 43k • written 11.1 years ago by ▴ 320
2
votes
3
replies
4.4k
views
Query Genbank Using A Mysql Interface
mysql genbank
updated 10.6 years ago by 161k • written 10.6 years ago by ▴ 320
1
vote
1
reply
2.6k
views
How Do I Convert A Log-Likelihood Obtained From Hmmer To An E-Value Or Vice-Versa?
hmmer
updated 10.6 years ago by 20 • written 11.0 years ago by ▴ 320
4
votes
1
reply
3.4k
views
Protein Hmm Profile In R/Python?
hmm r protein
10.9 years ago by arronslacey ▴ 320
18
votes
13
replies
18k
views
8 follow
How Do I Extract Sequence Ids From Fasta File?
fasta protein id
updated 10.9 years ago by 49k • written 10.9 years ago by ▴ 320
9
votes
3
replies
6.7k
views
Run Multiple Sequences Through Psipred
blast
updated 11.0 years ago by ★ 3.2k • written 11.0 years ago by ▴ 320
0
votes
3
replies
4.2k
views
Bioperl Protparam Expasy Server Redundant?
bioperl
updated 11.0 years ago by 49k • written 11.0 years ago by ▴ 320
34 results • Page 1 of 1
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