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2
votes
5
replies
5.2k
views
exon level quantification using htseq count
htseq-count RNA-Seq exon quantifications
updated 8.0 years ago by 105k • written 8.0 years ago by ★ 4.1k
0
votes
3
replies
4.8k
views
RSEM output interpretation
rsem
8.0 years ago by komal.rathi ★ 4.1k
0
votes
0
replies
9.8k
views
Comment: C: htseq-count cannot find pysam
8.1 years ago by komal.rathi ★ 4.1k
0
votes
1
reply
5.6k
views
Comment: C: How do I obtain germline mutation for TCGA samples?
8.1 years ago by komal.rathi ★ 4.1k
0
votes
6
replies
4.0k
views
IGV color interpretation by insert size
igv
updated 8.2 years ago by 103k • written 8.2 years ago by ★ 4.1k
0
votes
1
reply
4.0k
views
Comment: C: IGV color interpretation by insert size
8.2 years ago by komal.rathi ★ 4.1k
0
votes
1
reply
4.0k
views
Comment: C: IGV color interpretation by insert size
8.2 years ago by komal.rathi ★ 4.1k
0
votes
1
reply
3.2k
views
Comment: C: Detection of fusion events of Retrotransposons and genes/lncRNA from RNA-seq dat
8.2 years ago by komal.rathi ★ 4.1k
1
vote
0
replies
2.5k
views
Job: Bioinformatics Scientist I, Childrens Hospital of Philadelphia, Philadelphia, PA, USA
hpc wgs wes next-gen rna-seq
updated 2.3 years ago by 45k • written 8.3 years ago by ★ 4.1k
6
votes
1
reply
4.8k
views
Answer: A: Normalization of RNASeq read counts without conditions
8.3 years ago by komal.rathi ★ 4.1k
0
votes
6
replies
2.6k
views
Is it possible/recommended to trim RNA-Seq reads to a specific length
trim RNA-Seq chimeraScan STAR-Fusion
updated 8.3 years ago by 20 • written 8.5 years ago by ★ 4.1k
0
votes
1
reply
3.7k
views
Comment: C: How to create an AffyBatch object using a data matrix?
8.5 years ago by komal.rathi ★ 4.1k
1
vote
3
replies
3.7k
views
How to create an AffyBatch object using a data matrix?
affy affyBatch matrix
8.5 years ago by komal.rathi ★ 4.1k
0
votes
0
replies
2.2k
views
Comment: C: RNASeq differential expression: How to deal with few genes with extremely high e
8.5 years ago by komal.rathi ★ 4.1k
4
votes
2
replies
2.2k
views
RNASeq differential expression: How to deal with few genes with extremely high expression levels
RNA-Seq mtDNA limma voom
updated 8.5 years ago by 9.0k • written 8.5 years ago by ★ 4.1k
0
votes
0
replies
2.6k
views
Comment: C: Is it possible/recommended to trim RNA-Seq reads to a specific length
8.5 years ago by komal.rathi ★ 4.1k
0
votes
0
replies
2.6k
views
Comment: C: Is it possible/recommended to trim RNA-Seq reads to a specific length
8.5 years ago by komal.rathi ★ 4.1k
1
vote
2
replies
1.8k
views
TCGA disease subtype information
tcga
updated 8.6 years ago by 7.6k • written 8.6 years ago by ★ 4.1k
1
vote
0
replies
1.8k
views
Answer: A: TCGA disease subtype information
8.6 years ago by komal.rathi ★ 4.1k
0
votes
1
reply
114k
views
Comment: C: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
8.8 years ago by komal.rathi ★ 4.1k
5
votes
8
replies
3.5k
views
Visualizing hg19 and hg38 FPKMs in a single plot
RNA-Seq
updated 8.9 years ago by 11k • written 8.9 years ago by ★ 4.1k
0
votes
1
reply
3.5k
views
Comment: C: Visualizing hg19 and hg38 FPKMs in a single plot
8.9 years ago by komal.rathi ★ 4.1k
0
votes
1
reply
3.5k
views
Comment: C: Visualizing hg19 and hg38 FPKMs in a single plot
8.9 years ago by komal.rathi ★ 4.1k
3
votes
2
replies
2.5k
views
TARGET Pediatric Cancer Code Table
TARGET Code
8.9 years ago by komal.rathi ★ 4.1k
0
votes
0
replies
2.5k
views
Comment: C: TARGET Pediatric Cancer Code Table
8.9 years ago by komal.rathi ★ 4.1k
0
votes
0
replies
2.7k
views
CRLMM: Which array type work with which annotation package
crlmm
9.0 years ago by komal.rathi ★ 4.1k
6
votes
0
replies
4.0k
views
Answer: A: Hi-C analysis and significant interactions
9.0 years ago by komal.rathi ★ 4.1k
1
vote
0
replies
4.1k
views
Comment: C: changing gtf file manually
9.0 years ago by komal.rathi ★ 4.1k
1
vote
1
reply
4.1k
views
Answer: A: changing gtf file manually
9.0 years ago by komal.rathi ★ 4.1k
0
votes
0
replies
3.2k
views
Comment: C: Convert specific regions in bam file to vcf and annotating the vcf
9.1 years ago by komal.rathi ★ 4.1k
0
votes
0
replies
3.2k
views
Comment: C: Convert specific regions in bam file to vcf and annotating the vcf
9.1 years ago by komal.rathi ★ 4.1k
4
votes
5
replies
3.2k
views
Convert specific regions in bam file to vcf and annotating the vcf
exome sequencing bam vcf subset
9.1 years ago by komal.rathi ★ 4.1k
30
votes
23
replies
34k
views
10 follow
TCGA: Does TCGA cancer studies have mRNA expression data for Control/Normal samples?
RSEM controls TCGA normals RNASeq
updated 4.4 years ago by 45k • written 11.1 years ago by ★ 4.1k
1
vote
2
replies
2.5k
views
Some Ways To Analyze Picard Estimatelibrarycomplexity Results
picard
updated 9.2 years ago by 20 • written 11.9 years ago by ★ 4.1k
0
votes
0
replies
2.8k
views
Comment: C: Identify genes with extracellular matrix domains
9.2 years ago by komal.rathi ★ 4.1k
5
votes
2
replies
3.2k
views
Batch query obsolete gene names to get current HGNC symbol
gene symbols obsolete biomart genecards
9.2 years ago by komal.rathi ★ 4.1k
3
votes
1
reply
3.2k
views
Answer: A: Batch query obsolete gene names to get current HGNC symbol
9.2 years ago by komal.rathi ★ 4.1k
5
votes
6
replies
4.3k
views
Can't access DAVID
DAVID
updated 2.7 years ago by 45k • written 10.2 years ago by ★ 4.1k
0
votes
1
reply
2.8k
views
Comment: C: Identify genes with extracellular matrix domains
9.2 years ago by komal.rathi ★ 4.1k
0
votes
6
replies
2.8k
views
Identify genes with extracellular matrix domains
protein domain compartments extracellular matrix
updated 9.2 years ago by 18k • written 9.2 years ago by ★ 4.1k
0
votes
1
reply
2.8k
views
Comment: C: Identify genes that have domains sticking out in the extracellular matrix
9.2 years ago by komal.rathi ★ 4.1k
0
votes
0
replies
9.1k
views
Comment: C: Affymetrix probeset IDs...
9.3 years ago by komal.rathi ★ 4.1k
1
vote
0
replies
3.5k
views
Comment: C: HTSeq result, most genes have 0 count?
9.3 years ago by komal.rathi ★ 4.1k
30
votes
8
replies
60k
views
7 follow
R: How to convert log2FC (Fold Change) obtained by limma's topTable() function to FC
limma microarray topTable R
updated 3.2 years ago by 45k • written 11.4 years ago by ★ 4.1k
0
votes
1
reply
4.8k
views
Comment: C: How to sort fastq.gz files efficiently
9.5 years ago by komal.rathi ★ 4.1k
1
vote
3
replies
4.8k
views
How to sort fastq.gz files efficiently
fastq sort
updated 2.5 years ago by 45k • written 9.5 years ago by ★ 4.1k
5
votes
3
replies
7.4k
views
HISAT (Transcript Alignment) and StringTie (Transcript Assembly)
RNA-Seq HISAT StringTie
updated 3.2 years ago by 45k • written 10.9 years ago by ★ 4.1k
0
votes
1
reply
2.7k
views
Comment: C: Bioinformatics Scientist II, Electric Boogaloo. Philadelphia, PA
9.8 years ago by komal.rathi ★ 4.1k
6
votes
8
replies
7.6k
views
DESeq and Limma+Voom Normalization for Rna-Seq Data Using Ercc Spike-In
voom RNA-Seq spike-in deseq limma
updated 3.1 years ago by 45k • written 9.8 years ago by ★ 4.1k
3
votes
3
replies
10.0k
views
How to add tss_id and p_id in an Ensembl GTF (or any GTF other than that generated by cufflinks)
cuffcompare
updated 3.8 years ago by 45k • written 11.1 years ago by ★ 4.1k
413 results • Page 2 of 9
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