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Tutorial: how to combine multiple RNAseq count files into a single dataframe in R and unix
Unix RNAseq R
updated 3 hours ago by ★ 1.7k • written 2 days ago by ★ 3.9k
0
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0
replies
1.3k
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Comment: Comment: Transcription Start Site
5 weeks ago by Ming Tommy Tang ★ 3.9k
1
vote
0
replies
383
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Comment: Comment: scRNAseq normalization
5 weeks ago by Ming Tommy Tang ★ 3.9k
1
vote
1
reply
544
views
Answer: Answer: Subsetting Seurat object based on list of cell barcodes
5 weeks ago by Ming Tommy Tang ★ 3.9k
6
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0
replies
534
views
Tutorial: 12 useful command line tools and tricks for genomics data science
unix
updated 12 weeks ago by 11k • written 12 weeks ago by ★ 3.9k
0
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1
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294
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Comment: Comment: Deleting cells from seurat object
12 weeks ago by Ming Tommy Tang ★ 3.9k
0
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0
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312
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Tutorial: How to convert sra files to fastq files using parallelized fastq-dump
fastq sra
3 months ago by Ming Tommy Tang ★ 3.9k
0
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0
replies
233
views
Tutorial: How to Label the Y Axis with percentage sign and Order Bars in ggplot2 using a single cell dataset
seurat single-cell ggplot2
3 months ago by Ming Tommy Tang ★ 3.9k
1
vote
0
replies
277
views
Tutorial: How to Use Biomart to Find Mouse Orthologs for Human Genes
ids gene bioconductor
3 months ago by Ming Tommy Tang ★ 3.9k
1
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0
replies
777
views
Comment: Comment: How to get enhancer regions
3 months ago by Ming Tommy Tang ★ 3.9k
0
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1
reply
777
views
Comment: Comment: How to get enhancer regions
3 months ago by Ming Tommy Tang ★ 3.9k
1
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0
replies
695
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Comment: Comment: How to covert my gene IDs to gene Symbols
3 months ago by Ming Tommy Tang ★ 3.9k
0
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0
replies
1.0k
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Comment: Comment: Mapping FASTQ files of scRNA-seq to reference genome
3 months ago by Ming Tommy Tang ★ 3.9k
1
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0
replies
759
views
Comment: Comment: How to get started in bioinformatics
3 months ago by Ming Tommy Tang ★ 3.9k
2
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2
replies
777
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Answer: Answer: How to get enhancer regions
3 months ago by Ming Tommy Tang ★ 3.9k
1
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0
replies
403
views
Comment: Comment: annotation before integration
4 months ago by Ming Tommy Tang ★ 3.9k
3
votes
2
replies
867
views
Answer: Answer: How to rename multiple fasq files
4 months ago by Ming Tommy Tang ★ 3.9k
1
vote
0
replies
341
views
Tutorial: 4 CITE-seq tutorials
CTIE-seq
4 months ago by Ming Tommy Tang ★ 3.9k
1
vote
1
reply
1.1k
views
Comment: Comment: multi-omics data integration: a case study with transcriptomics and genomics mut
4 months ago by Ming Tommy Tang ★ 3.9k
3
votes
3
replies
1.1k
views
Tutorial: multi-omics data integration: a case study with transcriptomics and genomics mutation data
mutation RNAseq multiomics
updated 3 months ago by ▴ 40 • written 8 months ago by ★ 3.9k
0
votes
0
replies
360
views
Tutorial: download metadata using GEOquery
computational-biology GEO metadata
updated 4 months ago by 43k • written 4 months ago by ★ 3.9k
1
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0
replies
322
views
Tutorial: CITEseq tutorial
CITEseq Alevin Seurat
4 months ago by Ming Tommy Tang ★ 3.9k
0
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0
replies
2.9k
views
Comment: Comment: New ebook: From cell line to Command line to learn computational biology
5 months ago by Ming Tommy Tang ★ 3.9k
1
vote
0
replies
275
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Blog: How to use random forest for clustering
computational-biology random-forest
updated 5 months ago by 43k • written 5 months ago by ★ 3.9k
4
votes
2
replies
2.9k
views
News: New ebook: From cell line to Command line to learn computational biology
unix snakemake computational-biology RNA-seq
5 months ago by Ming Tommy Tang ★ 3.9k
0
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0
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683
views
Comment: Comment: FPKM values for DE analysis - Why?
6 months ago by Ming Tommy Tang ★ 3.9k
2
votes
0
replies
523
views
Answer: Answer: Ensembl transcript IDs
6 months ago by Ming Tommy Tang ★ 3.9k
0
votes
1
reply
745
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Answer: Answer: Integration Seurat different healthy samples (fresh vs frozen)
6 months ago by Ming Tommy Tang ★ 3.9k
2
votes
1
reply
466
views
Answer: Answer: Designing Bioinformatic Pipeline to work on the Single cell RNA sequencing data
6 months ago by Ming Tommy Tang ★ 3.9k
2
votes
1
reply
522
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Answer: Answer: Downstream analysis during sc-ATAC seq
6 months ago by Ming Tommy Tang ★ 3.9k
1
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0
replies
515
views
Tutorial: How to convert raw counts to TPM for TCGA data and make a heatmap across cancer types
RNAseq heatmap rstats TCGA
6 months ago by Ming Tommy Tang ★ 3.9k
3
votes
0
replies
1.5k
views
Answer: Answer: Picking optimal resolution for single cell in seurat pipeline
6 months ago by Ming Tommy Tang ★ 3.9k
0
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0
replies
577
views
Comment: Comment: 10X scRNA-seq v2 odd fastq format
7 months ago by Ming Tommy Tang ★ 3.9k
0
votes
1
reply
679
views
Comment: Comment: How to run TRUST4 for BCR/TCR detection using 10X data?
7 months ago by Ming Tommy Tang ★ 3.9k
3
votes
0
replies
682
views
Comment: Comment: Seeking a real project
7 months ago by Ming Tommy Tang ★ 3.9k
3
votes
0
replies
665
views
Answer: Answer: Bulk and Single cell TCRSeq analysis
8 months ago by Ming Tommy Tang ★ 3.9k
0
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1
reply
643
views
Answer: Answer: Blocky p300 ChIP-seq reads
8 months ago by Ming Tommy Tang ★ 3.9k
1
vote
0
replies
533
views
Comment: Comment: How to choose the number of cluster in single cell multiome (RNA & ATAC)
8 months ago by Ming Tommy Tang ★ 3.9k
0
votes
0
replies
676
views
Tutorial: T Cell Clonal Analysis Using Single-cell RNA Sequencing and Reference Maps
RNAseq TCR single-cell computational biology
8 months ago by Ming Tommy Tang ★ 3.9k
1
vote
0
replies
530
views
Tutorial: cellular niches analysis with spatial transcriptome data in Seurat and Bioconductor
transcriptome rstats spatial single-cell
8 months ago by Ming Tommy Tang ★ 3.9k
0
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0
replies
761
views
Comment: Comment: DMR Analysis for RRBS: what annotation file to I use?
9 months ago by Ming Tommy Tang ★ 3.9k
0
votes
1
reply
508
views
Comment: Comment: How to resample contacts data to lower bins
9 months ago by Ming Tommy Tang ★ 3.9k
1
vote
0
replies
676
views
Answer: Answer: Phasing Classical HLA Alleles
9 months ago by Ming Tommy Tang ★ 3.9k
1
vote
0
replies
633
views
Tutorial: common mistakes in using spreadsheets
excel spreadsheet structured-data
updated 9 months ago by 43k • written 9 months ago by ★ 3.9k
0
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0
replies
1.2k
views
Comment: Comment: Convert files made for b37 into hg19 human reference?
9 months ago by Ming Tommy Tang ★ 3.9k
1
vote
0
replies
684
views
Tutorial: How to convert gene ids in R
computational-biology gene-id rstats
updated 9 months ago by 43k • written 9 months ago by ★ 3.9k
0
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0
replies
1.1k
views
Comment: Comment: How to use UCSC genome browser to check the transcription factor binding at your
9 months ago by Ming Tommy Tang ★ 3.9k
0
votes
0
replies
664
views
Comment: Comment: Is there a way to prove that two VCFs came from the same person?
9 months ago by Ming Tommy Tang ★ 3.9k
2
votes
0
replies
3.2k
views
Tutorial: How to read multiple matrices from GEO into R and make multiple Seurat objects and merge them into a single object.
unix Seurat single-cell rstats
updated 9 months ago by 43k • written 9 months ago by ★ 3.9k
4
votes
2
replies
1.1k
views
Tutorial: How to use UCSC genome browser to check the transcription factor binding at your favorite gene
UCSC transcription factor ChIP-seq
9 months ago by Ming Tommy Tang ★ 3.9k
424 results • Page 1 of 9
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