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12
votes
11
replies
7.0k
views
6 follow
Combine two VCF files with GATK4
GATK
updated 2.1 years ago by
Ram
44k • written 3.7 years ago by
MAPK
★ 2.1k
0
votes
1
reply
2.8k
views
GATK tool to merge INDEL with SNPs with the same set of samples
VCF
GATK
updated 3.6 years ago by
Biostar
20 • written 3.7 years ago by
MAPK
★ 2.1k
0
votes
1
reply
3.2k
views
Comment:
C: Split plink files from multiallelic to biallelic
3.7 years ago by
MAPK
★ 2.1k
1
vote
4
replies
3.2k
views
Split plink files from multiallelic to biallelic
Plink
updated 3.3 years ago by
sayyarsehrish
• 0 • written 3.7 years ago by
MAPK
★ 2.1k
4
votes
4
replies
5.7k
views
How to remove chr from VCF file
VCF
updated 3.7 years ago by
tothepoint
▴ 930 • written 3.7 years ago by
MAPK
★ 2.1k
0
votes
0
replies
5.7k
views
Comment:
C: How to remove chr from VCF file
3.7 years ago by
MAPK
★ 2.1k
1
vote
1
reply
843
views
Working with multi-biallelic rows of VCF in plink
plink
vcf
gatk
3.7 years ago by
MAPK
★ 2.1k
0
votes
0
replies
2.4k
views
Comment:
C: Plink error with reading phenotype file
3.7 years ago by
MAPK
★ 2.1k
3
votes
2
replies
2.4k
views
Plink error with reading phenotype file
plink
updated 3.7 years ago by
chrchang523
11k • written 3.7 years ago by
MAPK
★ 2.1k
0
votes
1
reply
1.1k
views
Calculating Allele Balance in GATK4
GATK
updated 2.9 years ago by
astrinaki_maria
• 0 • written 3.7 years ago by
MAPK
★ 2.1k
0
votes
0
replies
7.0k
views
Comment:
C: Combine two VCF files with GATK4
3.7 years ago by
MAPK
★ 2.1k
0
votes
1
reply
7.0k
views
Comment:
C: Combine two VCF files with GATK4
3.7 years ago by
MAPK
★ 2.1k
0
votes
2
replies
7.0k
views
Comment:
C: Combine two VCF files with GATK4
3.7 years ago by
MAPK
★ 2.1k
0
votes
0
replies
1.9k
views
MergeVcfs vs GatherVCFs in GATK 4
gatk
3.7 years ago by
MAPK
★ 2.1k
0
votes
0
replies
43k
views
Comment:
C: Extract subset of samples from multigenome vcf file
3.8 years ago by
MAPK
★ 2.1k
0
votes
0
replies
984
views
Comment:
C: BWA aligner error: paired reads have different names
3.8 years ago by
MAPK
★ 2.1k
1
vote
2
replies
984
views
BWA aligner error: paired reads have different names
bwa
3.8 years ago by
MAPK
★ 2.1k
14
votes
12
replies
6.5k
views
Adapter trimming of small RNAseq data
smallRNAseq
RNA-Seq
adapter
trimming
updated 3.8 years ago by
Biostar
20 • written 6.2 years ago by
MAPK
★ 2.1k
3
votes
1
reply
1.2k
views
How to add prefix to samtools collate
samtools
updated 3.9 years ago by
ATpoint
85k • written 3.9 years ago by
MAPK
★ 2.1k
2
votes
8
replies
2.5k
views
How to select values based on specific condition from the matrix in R
R
updated 21 months ago by
Ram
44k • written 9.3 years ago by
MAPK
★ 2.1k
5
votes
1
reply
5.0k
views
Comment:
C: PhD in Bioinformatics: to continue, or not to continue? That is the question--
3.9 years ago by
MAPK
★ 2.1k
0
votes
0
replies
2.7k
views
Answer:
A: Split paired end fastq per lane from a bam file
3.9 years ago by
MAPK
★ 2.1k
11
votes
14
replies
2.7k
views
Split paired end fastq per lane from a bam file
fastq
bam
3.9 years ago by
MAPK
★ 2.1k
0
votes
0
replies
2.7k
views
Comment:
C: Split paired end fastq per lane from a bam file
3.9 years ago by
MAPK
★ 2.1k
0
votes
0
replies
6.6k
views
Comment:
C: How to assign read groups to bam files?
3.9 years ago by
MAPK
★ 2.1k
0
votes
1
reply
6.6k
views
Comment:
C: How to assign read groups to bam files?
3.9 years ago by
MAPK
★ 2.1k
0
votes
1
reply
2.7k
views
Comment:
C: Split paired end fastq per lane from a bam file
3.9 years ago by
MAPK
★ 2.1k
0
votes
1
reply
2.7k
views
Comment:
C: Split paired end fastq per lane from a bam file
updated 3.9 years ago by
ATpoint
85k • written 3.9 years ago by
MAPK
★ 2.1k
0
votes
1
reply
2.7k
views
Comment:
C: Split paired end fastq per lane from a bam file
3.9 years ago by
MAPK
★ 2.1k
0
votes
1
reply
1.0k
views
Picard's AddOrReplaceReadGroups gives invalid argument error
picard
addreplacereadgroups
updated 3.9 years ago by
a.alnawfal.1992
▴ 350 • written 3.9 years ago by
MAPK
★ 2.1k
0
votes
1
reply
6.6k
views
Comment:
C: How to assign read groups to bam files?
3.9 years ago by
MAPK
★ 2.1k
5
votes
22
replies
6.6k
views
How to assign read groups to bam files?
BAM
3.9 years ago by
MAPK
★ 2.1k
0
votes
1
reply
6.6k
views
Comment:
C: How to assign read groups to bam files?
3.9 years ago by
MAPK
★ 2.1k
0
votes
1
reply
6.6k
views
Comment:
C: How to assign read groups to bam files?
3.9 years ago by
MAPK
★ 2.1k
0
votes
0
replies
3.1k
views
Trinity-v2.5.1 assembly generating bowtie 2 error
rnaseq
trinity
updated 3.9 years ago by
Biostar
20 • written 6.9 years ago by
MAPK
★ 2.1k
4
votes
2
replies
1.4k
views
BWA alignment generating errors
BWA
alignment
4.0 years ago by
MAPK
★ 2.1k
0
votes
2
replies
1.6k
views
Extract SRA reads per RG using fasterq-dump
SRA
fasterq-dump
dbGAP
4.0 years ago by
MAPK
★ 2.1k
0
votes
0
replies
1.6k
views
Comment:
C: Extract SRA reads per RG using fasterq-dump
4.0 years ago by
MAPK
★ 2.1k
0
votes
0
replies
2.9k
views
Answer:
C: Suggestions on Labtop Mac for Bioinformatics
4.0 years ago by
MAPK
★ 2.1k
0
votes
0
replies
6.6k
views
Comment:
C: How to assign read groups to bam files?
4.0 years ago by
MAPK
★ 2.1k
0
votes
1
reply
6.6k
views
Comment:
C: How to assign read groups to bam files?
4.0 years ago by
MAPK
★ 2.1k
0
votes
0
replies
6.6k
views
Comment:
C: How to assign read groups to bam files?
4.0 years ago by
MAPK
★ 2.1k
0
votes
1
reply
6.6k
views
Comment:
C: How to assign read groups to bam files?
4.0 years ago by
MAPK
★ 2.1k
0
votes
2
replies
6.6k
views
Comment:
C: How to assign read groups to bam files?
4.0 years ago by
MAPK
★ 2.1k
0
votes
1
reply
6.6k
views
Comment:
C: How to assign read groups to bam files?
4.0 years ago by
MAPK
★ 2.1k
0
votes
0
replies
2.0k
views
Comment:
C: Revert bam to fastq
4.0 years ago by
MAPK
★ 2.1k
0
votes
2
replies
2.0k
views
Comment:
C: Revert bam to fastq
4.0 years ago by
MAPK
★ 2.1k
4
votes
9
replies
2.0k
views
Revert bam to fastq
sam
bam
updated 4.0 years ago by
h.mon
35k • written 4.0 years ago by
MAPK
★ 2.1k
0
votes
1
reply
2.0k
views
Comment:
C: Revert bam to fastq
4.0 years ago by
MAPK
★ 2.1k
0
votes
0
replies
3.2k
views
Comment:
C: Extract bed regions from CRAM files
4.1 years ago by
MAPK
★ 2.1k
560 results • Page
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