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12
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11
replies
7.5k
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Combine two VCF files with GATK4
GATK
updated 2.4 years ago by 44k • written 4.0 years ago by ★ 2.1k
0
votes
1
reply
2.9k
views
GATK tool to merge INDEL with SNPs with the same set of samples
VCF GATK
updated 3.9 years ago by 20 • written 4.0 years ago by ★ 2.1k
0
votes
1
reply
3.4k
views
Comment: C: Split plink files from multiallelic to biallelic
3.9 years ago by MAPK ★ 2.1k
1
vote
4
replies
3.4k
views
Split plink files from multiallelic to biallelic
Plink
updated 3.6 years ago by • 0 • written 3.9 years ago by ★ 2.1k
4
votes
4
replies
6.0k
views
How to remove chr from VCF file
VCF
updated 3.9 years ago by ▴ 940 • written 3.9 years ago by ★ 2.1k
0
votes
0
replies
6.0k
views
Comment: C: How to remove chr from VCF file
3.9 years ago by MAPK ★ 2.1k
1
vote
1
reply
884
views
Working with multi-biallelic rows of VCF in plink
plink vcf gatk
4.0 years ago by MAPK ★ 2.1k
0
votes
0
replies
2.5k
views
Comment: C: Plink error with reading phenotype file
4.0 years ago by MAPK ★ 2.1k
3
votes
2
replies
2.5k
views
Plink error with reading phenotype file
plink
updated 4.0 years ago by 11k • written 4.0 years ago by ★ 2.1k
0
votes
1
reply
1.2k
views
Calculating Allele Balance in GATK4
GATK
updated 3.2 years ago by • 0 • written 4.0 years ago by ★ 2.1k
0
votes
0
replies
7.5k
views
Comment: C: Combine two VCF files with GATK4
4.0 years ago by MAPK ★ 2.1k
0
votes
1
reply
7.5k
views
Comment: C: Combine two VCF files with GATK4
4.0 years ago by MAPK ★ 2.1k
0
votes
2
replies
7.5k
views
Comment: C: Combine two VCF files with GATK4
4.0 years ago by MAPK ★ 2.1k
0
votes
0
replies
2.0k
views
MergeVcfs vs GatherVCFs in GATK 4
gatk
4.0 years ago by MAPK ★ 2.1k
0
votes
0
replies
44k
views
Comment: C: Extract subset of samples from multigenome vcf file
4.0 years ago by MAPK ★ 2.1k
0
votes
0
replies
1.0k
views
Comment: C: BWA aligner error: paired reads have different names
4.0 years ago by MAPK ★ 2.1k
1
vote
2
replies
1.0k
views
BWA aligner error: paired reads have different names
bwa
4.0 years ago by MAPK ★ 2.1k
14
votes
12
replies
6.8k
views
Adapter trimming of small RNAseq data
smallRNAseq RNA-Seq adapter trimming
updated 4.1 years ago by 20 • written 6.5 years ago by ★ 2.1k
3
votes
1
reply
1.2k
views
How to add prefix to samtools collate
samtools
updated 4.2 years ago by 86k • written 4.2 years ago by ★ 2.1k
2
votes
8
replies
2.6k
views
How to select values based on specific condition from the matrix in R
R
updated 2.1 years ago by 44k • written 9.6 years ago by ★ 2.1k
5
votes
1
reply
5.1k
views
Comment: C: PhD in Bioinformatics: to continue, or not to continue? That is the question--
4.2 years ago by MAPK ★ 2.1k
0
votes
0
replies
2.9k
views
Answer: A: Split paired end fastq per lane from a bam file
4.2 years ago by MAPK ★ 2.1k
11
votes
14
replies
2.9k
views
Split paired end fastq per lane from a bam file
fastq bam
4.2 years ago by MAPK ★ 2.1k
0
votes
0
replies
2.9k
views
Comment: C: Split paired end fastq per lane from a bam file
4.2 years ago by MAPK ★ 2.1k
0
votes
0
replies
7.0k
views
Comment: C: How to assign read groups to bam files?
4.2 years ago by MAPK ★ 2.1k
0
votes
1
reply
7.0k
views
Comment: C: How to assign read groups to bam files?
4.2 years ago by MAPK ★ 2.1k
0
votes
1
reply
2.9k
views
Comment: C: Split paired end fastq per lane from a bam file
4.2 years ago by MAPK ★ 2.1k
0
votes
1
reply
2.9k
views
Comment: C: Split paired end fastq per lane from a bam file
updated 4.2 years ago by 86k • written 4.2 years ago by ★ 2.1k
0
votes
1
reply
2.9k
views
Comment: C: Split paired end fastq per lane from a bam file
4.2 years ago by MAPK ★ 2.1k
0
votes
1
reply
1.1k
views
Picard's AddOrReplaceReadGroups gives invalid argument error
picard addreplacereadgroups
updated 4.2 years ago by ▴ 360 • written 4.2 years ago by ★ 2.1k
0
votes
1
reply
7.0k
views
Comment: C: How to assign read groups to bam files?
4.2 years ago by MAPK ★ 2.1k
5
votes
22
replies
7.0k
views
How to assign read groups to bam files?
BAM
4.2 years ago by MAPK ★ 2.1k
0
votes
1
reply
7.0k
views
Comment: C: How to assign read groups to bam files?
4.2 years ago by MAPK ★ 2.1k
0
votes
1
reply
7.0k
views
Comment: C: How to assign read groups to bam files?
4.2 years ago by MAPK ★ 2.1k
0
votes
0
replies
3.2k
views
Trinity-v2.5.1 assembly generating bowtie 2 error
rnaseq trinity
updated 4.2 years ago by 20 • written 7.2 years ago by ★ 2.1k
4
votes
2
replies
1.5k
views
BWA alignment generating errors
BWA alignment
4.2 years ago by MAPK ★ 2.1k
0
votes
2
replies
1.6k
views
Extract SRA reads per RG using fasterq-dump
SRA fasterq-dump dbGAP
4.2 years ago by MAPK ★ 2.1k
0
votes
0
replies
1.6k
views
Comment: C: Extract SRA reads per RG using fasterq-dump
4.2 years ago by MAPK ★ 2.1k
0
votes
0
replies
3.1k
views
Answer: C: Suggestions on Labtop Mac for Bioinformatics
4.3 years ago by MAPK ★ 2.1k
0
votes
0
replies
7.0k
views
Comment: C: How to assign read groups to bam files?
4.3 years ago by MAPK ★ 2.1k
0
votes
1
reply
7.0k
views
Comment: C: How to assign read groups to bam files?
4.3 years ago by MAPK ★ 2.1k
0
votes
0
replies
7.0k
views
Comment: C: How to assign read groups to bam files?
4.3 years ago by MAPK ★ 2.1k
0
votes
1
reply
7.0k
views
Comment: C: How to assign read groups to bam files?
4.3 years ago by MAPK ★ 2.1k
0
votes
2
replies
7.0k
views
Comment: C: How to assign read groups to bam files?
4.3 years ago by MAPK ★ 2.1k
0
votes
1
reply
7.0k
views
Comment: C: How to assign read groups to bam files?
4.3 years ago by MAPK ★ 2.1k
0
votes
0
replies
2.2k
views
Comment: C: Revert bam to fastq
4.3 years ago by MAPK ★ 2.1k
0
votes
2
replies
2.2k
views
Comment: C: Revert bam to fastq
4.3 years ago by MAPK ★ 2.1k
4
votes
9
replies
2.2k
views
Revert bam to fastq
sam bam
updated 4.3 years ago by 35k • written 4.3 years ago by ★ 2.1k
0
votes
1
reply
2.2k
views
Comment: C: Revert bam to fastq
4.3 years ago by MAPK ★ 2.1k
0
votes
0
replies
3.4k
views
Comment: C: Extract bed regions from CRAM files
4.3 years ago by MAPK ★ 2.1k
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